Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BJY entry

There are 6 chains in PDB entry 6BJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	U 1	U 45
A	SER 2	LYS 422
B	SER 2	LYS 422
C	SER 2	LYS 422
D	SER 2	LYS 422
E	SER 2	LYS 422

There are 99 helices in PDB entry 6BJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	65	77	Right-handed alpha
Helix 4	AA4	A	129	146	Right-handed alpha
Helix 5	AA5	A	151	163	Right-handed alpha
Helix 6	AA6	A	182	187	Right-handed 310
Helix 7	AA7	A	188	205	Right-handed alpha
Helix 8	AA8	A	208	215	Right-handed 310
Helix 9	AA9	A	217	221	Right-handed 310
Helix 10	AB1	A	225	239	Right-handed alpha
Helix 11	AB2	A	241	248	Right-handed alpha
Helix 12	AB3	A	251	262	Right-handed alpha
Helix 13	AB4	A	274	278	Right-handed 310
Helix 14	AB5	A	294	308	Right-handed alpha
Helix 15	AB6	A	311	316	Right-handed 310
Helix 16	AB7	A	323	341	Right-handed alpha
Helix 17	AB8	A	374	385	Right-handed alpha
Helix 18	AB9	A	390	402	Right-handed alpha
Helix 19	AC1	A	411	421	Right-handed alpha
Helix 20	AC2	B	28	33	Right-handed alpha
Helix 21	AC3	B	47	60	Right-handed alpha
Helix 22	AC4	B	65	77	Right-handed alpha
Helix 23	AC5	B	129	146	Right-handed alpha
Helix 24	AC6	B	151	163	Right-handed alpha
Helix 25	AC7	B	182	187	Right-handed 310
Helix 26	AC8	B	188	205	Right-handed alpha
Helix 27	AC9	B	208	212	Right-handed 310
Helix 28	AD1	B	213	218	Right-handed alpha
Helix 29	AD2	B	219	221	Right-handed 310
Helix 30	AD3	B	225	239	Right-handed alpha
Helix 31	AD4	B	241	248	Right-handed alpha
Helix 32	AD5	B	251	262	Right-handed alpha
Helix 33	AD6	B	274	278	Right-handed 310
Helix 34	AD7	B	294	308	Right-handed alpha
Helix 35	AD8	B	312	316	Right-handed 310
Helix 36	AD9	B	323	341	Right-handed alpha
Helix 37	AE1	B	374	385	Right-handed alpha
Helix 38	AE2	B	390	402	Right-handed alpha
Helix 39	AE3	B	411	421	Right-handed alpha
Helix 40	AE4	C	28	33	Right-handed alpha
Helix 41	AE5	C	47	60	Right-handed alpha
Helix 42	AE6	C	65	77	Right-handed alpha
Helix 43	AE7	C	133	146	Right-handed alpha
Helix 44	AE8	C	151	163	Right-handed alpha
Helix 45	AE9	C	184	187	Right-handed 310
Helix 46	AF1	C	188	205	Right-handed alpha
Helix 47	AF2	C	210	212	Right-handed 310
Helix 48	AF3	C	213	218	Right-handed alpha
Helix 49	AF4	C	219	221	Right-handed 310
Helix 50	AF5	C	225	239	Right-handed alpha
Helix 51	AF6	C	241	248	Right-handed alpha
Helix 52	AF7	C	251	262	Right-handed alpha
Helix 53	AF8	C	263	267	Right-handed 310
Helix 54	AF9	C	274	278	Right-handed 310
Helix 55	AG1	C	294	308	Right-handed alpha
Helix 56	AG2	C	312	316	Right-handed 310
Helix 57	AG3	C	323	341	Right-handed alpha
Helix 58	AG4	C	374	385	Right-handed alpha
Helix 59	AG5	C	390	402	Right-handed alpha
Helix 60	AG6	C	411	421	Right-handed alpha
Helix 61	AG7	D	28	33	Right-handed alpha
Helix 62	AG8	D	47	61	Right-handed alpha
Helix 63	AG9	D	65	77	Right-handed alpha
Helix 64	AH1	D	133	146	Right-handed alpha
Helix 65	AH2	D	151	163	Right-handed alpha
Helix 66	AH3	D	181	187	Right-handed 310
Helix 67	AH4	D	188	205	Right-handed alpha
Helix 68	AH5	D	208	215	Right-handed 310
Helix 69	AH6	D	217	221	Right-handed 310
Helix 70	AH7	D	225	239	Right-handed alpha
Helix 71	AH8	D	241	248	Right-handed alpha
Helix 72	AH9	D	251	262	Right-handed alpha
Helix 73	AI1	D	274	278	Right-handed 310
Helix 74	AI2	D	294	308	Right-handed alpha
Helix 75	AI3	D	312	316	Right-handed 310
Helix 76	AI4	D	323	341	Right-handed alpha
Helix 77	AI5	D	374	385	Right-handed alpha
Helix 78	AI6	D	390	402	Right-handed alpha
Helix 79	AI7	D	411	421	Right-handed alpha
Helix 80	AI8	E	28	32	Right-handed 310
Helix 81	AI9	E	47	60	Right-handed alpha
Helix 82	AJ1	E	65	77	Right-handed alpha
Helix 83	AJ2	E	133	145	Right-handed alpha
Helix 84	AJ3	E	151	163	Right-handed alpha
Helix 85	AJ4	E	181	187	Right-handed 310
Helix 86	AJ5	E	188	205	Right-handed alpha
Helix 87	AJ6	E	210	212	Right-handed 310
Helix 88	AJ7	E	213	218	Right-handed alpha
Helix 89	AJ8	E	219	221	Right-handed 310
Helix 90	AJ9	E	225	239	Right-handed alpha
Helix 91	AK1	E	241	248	Right-handed alpha
Helix 92	AK2	E	251	262	Right-handed alpha
Helix 93	AK3	E	274	278	Right-handed 310
Helix 94	AK4	E	294	308	Right-handed alpha
Helix 95	AK5	E	312	316	Right-handed 310
Helix 96	AK6	E	323	341	Right-handed alpha
Helix 97	AK7	E	374	385	Right-handed alpha
Helix 98	AK8	E	390	402	Right-handed alpha
Helix 99	AK9	E	411	421	Right-handed alpha

There are 12 sheets in PDB entry 6BJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	5	7	anti-parallel
Strand 3	C	348	349	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	93	96	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	5	7	anti-parallel
Strand 3	D	348	349	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	109	110	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	93	96	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	E	5	7	anti-parallel
Strand 3	E	12	14	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	12	14	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	93	96	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	12	14	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	93	96	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	110	112	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	93	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BJY