Analysis of interatomic Contacts of Structural Units in PDB entry:
6BKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BKA entry

There are 2 chains in PDB entry 6BKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 52
A
 ASP 54LEU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
28 39Right-handed alpha
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
88 107Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
152 162Right-handed alpha
Helix 8
AA8
A
172 182Right-handed alpha
Helix 9
AA9
A
212 228Right-handed alpha
Helix 10
AB1
A
243 252Right-handed alpha
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
303 312Right-handed alpha
Helix 14
AB5
A
314 318Right-handed 310
Helix 15
AB6
A
322 338Right-handed alpha
Helix 16
AB7
A
341 345Right-handed 310
Helix 17
AB8
A
352 356Right-handed 310
Helix 18
AB9
A
362 372Right-handed alpha
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There are 2 sheets in PDB entry 6BKA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
257 260parallel
Strand 3
A
234 238parallel
Strand 4
A
186 190parallel
Strand 5
A
165 170parallel
Strand 6
A
143 147parallel
Strand 7
A
74 79parallel
Strand 8
A
42 45parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
287 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il