Analysis of interatomic Contacts of Structural Units in PDB entry:
6BKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BKF entry

There are 4 chains in PDB entry 6BKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9ARG 603
P
 G 1 C 11
T
 G 1 C 18
D
 G 2 C 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6BKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
31 55Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
73 76Right-handed 310
Helix 5
AA5
A
85 98Right-handed alpha
Helix 6
AA6
A
103 111Right-handed alpha
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
144 161Right-handed alpha
Helix 9
AA9
A
163 177Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
199 208Right-handed alpha
Helix 12
AB3
A
210 217Right-handed alpha
Helix 13
AB4
A
220 228Right-handed alpha
Helix 14
AB5
A
255 257Right-handed 310
Helix 15
AB6
A
258 263Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
311 316Right-handed alpha
Helix 18
AB9
A
317 319Right-handed 310
Helix 19
AC1
A
381 393Right-handed alpha
Helix 20
AC2
A
410 424Right-handed alpha
Helix 21
AC3
A
457 461Right-handed 310
Helix 22
AC4
A
512 522Right-handed alpha
Helix 23
AC5
A
523 526Right-handed 310
Helix 24
AC6
A
550 554Right-handed 310
Helix 25
AC7
A
589 593Right-handed 310
Helix 26
AC8
A
595 603Right-handed alpha
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There are 6 sheets in PDB entry 6BKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
447 450parallel
Strand 3
A
429 432anti-parallel
Strand 4
A
268 272anti-parallel
Strand 5
A
405 408anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
277 284anti-parallel
Strand 3
A
325 336anti-parallel
Strand 4
A
361 372anti-parallel
Strand 5
A
375 376anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
325 336anti-parallel
Strand 3
A
361 372anti-parallel
Strand 4
A
400 402parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
547 548anti-parallel
Strand 3
A
462 471anti-parallel
Strand 4
A
480 488anti-parallel
Strand 5
A
500 507anti-parallel
Strand 6
A
538 539parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
547 548anti-parallel
Strand 3
A
462 471anti-parallel
Strand 4
A
556 560anti-parallel
Strand 5
A
580 584anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 566first strand
Strand 2
A
574 577anti-parallel
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