Analysis of interatomic Contacts of Structural Units in PDB entry:
6BKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BKJ entry

There are 8 chains in PDB entry 6BKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 57	THR 417
B	GLU 58	ALA 418
C	LYS 59	ALA 418
D	LYS 57	LEU 416
F	LEU 356	LEU 357
G	LEU 356	LEU 357
H	LEU 356	LEU 357
I	LEU 356	LEU 357

There are 52 helices in PDB entry 6BKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	71	Right-handed alpha
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	101	106	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed 310
Helix 5	AA5	A	128	139	Right-handed alpha
Helix 6	AA6	A	141	149	Right-handed alpha
Helix 7	AA7	A	200	213	Right-handed alpha
Helix 8	AA8	A	216	220	Right-handed 310
Helix 9	AA9	A	223	233	Right-handed alpha
Helix 10	AB1	A	247	258	Right-handed alpha
Helix 11	AB2	A	373	379	Right-handed 310
Helix 12	AB3	A	380	388	Right-handed alpha
Helix 13	AB4	A	401	408	Right-handed alpha
Helix 14	AB5	B	60	71	Right-handed alpha
Helix 15	AB6	B	83	88	Right-handed alpha
Helix 16	AB7	B	101	106	Right-handed alpha
Helix 17	AB8	B	117	121	Right-handed 310
Helix 18	AB9	B	131	140	Right-handed alpha
Helix 19	AC1	B	141	149	Right-handed alpha
Helix 20	AC2	B	200	213	Right-handed alpha
Helix 21	AC3	B	216	220	Right-handed 310
Helix 22	AC4	B	223	233	Right-handed alpha
Helix 23	AC5	B	247	258	Right-handed alpha
Helix 24	AC6	B	373	379	Right-handed 310
Helix 25	AC7	B	380	387	Right-handed alpha
Helix 26	AC8	B	401	408	Right-handed alpha
Helix 27	AC9	C	60	71	Right-handed alpha
Helix 28	AD1	C	83	88	Right-handed alpha
Helix 29	AD2	C	101	106	Right-handed alpha
Helix 30	AD3	C	128	139	Right-handed alpha
Helix 31	AD4	C	141	149	Right-handed alpha
Helix 32	AD5	C	200	213	Right-handed alpha
Helix 33	AD6	C	216	220	Right-handed 310
Helix 34	AD7	C	223	233	Right-handed alpha
Helix 35	AD8	C	242	244	Right-handed 310
Helix 36	AD9	C	247	258	Right-handed alpha
Helix 37	AE1	C	373	379	Right-handed 310
Helix 38	AE2	C	380	387	Right-handed alpha
Helix 39	AE3	C	401	408	Right-handed alpha
Helix 40	AE4	D	60	71	Right-handed alpha
Helix 41	AE5	D	83	88	Right-handed alpha
Helix 42	AE6	D	101	106	Right-handed alpha
Helix 43	AE7	D	117	121	Right-handed 310
Helix 44	AE8	D	128	139	Right-handed alpha
Helix 45	AE9	D	141	149	Right-handed alpha
Helix 46	AF1	D	200	213	Right-handed alpha
Helix 47	AF2	D	216	220	Right-handed 310
Helix 48	AF3	D	223	233	Right-handed alpha
Helix 49	AF4	D	247	258	Right-handed alpha
Helix 50	AF5	D	373	379	Right-handed 310
Helix 51	AF6	D	380	387	Right-handed alpha
Helix 52	AF7	D	401	408	Right-handed alpha

There are 12 sheets in PDB entry 6BKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	182	185	anti-parallel
Strand 3	A	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	169	first strand
Strand 2	A	172	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	410	415	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	336	346	anti-parallel
Strand 5	A	349	357	anti-parallel
Strand 6	A	396	400	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	182	185	anti-parallel
Strand 3	B	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	169	first strand
Strand 2	B	172	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	410	415	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	336	346	anti-parallel
Strand 5	B	349	357	anti-parallel
Strand 6	B	396	400	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	182	185	anti-parallel
Strand 3	C	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	169	first strand
Strand 2	C	172	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	410	414	anti-parallel
Strand 3	C	261	265	anti-parallel
Strand 4	C	336	346	anti-parallel
Strand 5	C	349	357	anti-parallel
Strand 6	C	396	400	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	182	185	anti-parallel
Strand 3	D	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	169	first strand
Strand 2	D	172	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	410	415	anti-parallel
Strand 3	D	261	265	anti-parallel
Strand 4	D	336	346	anti-parallel
Strand 5	D	349	357	anti-parallel
Strand 6	D	396	400	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BKJ