Analysis of interatomic Contacts of Structural Units in PDB entry:
6BLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BLD entry

There is 1 chain in PDB entry 6BLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6PHE 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6BLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
66 76Right-handed alpha
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
100 105Right-handed 310
Helix 6
AA6
A
108 118Right-handed alpha
Helix 7
AA7
A
119 121Right-handed 310
Helix 8
AA8
A
122 148Right-handed alpha
Helix 9
AA9
A
153 157Right-handed alpha
Helix 10
AB1
A
159 171Right-handed alpha
Helix 11
AB2
A
173 175Right-handed 310
Helix 12
AB3
A
176 187Right-handed alpha
Helix 13
AB4
A
192 197Right-handed alpha
Helix 14
AB5
A
200 226Right-handed alpha
Helix 15
AB6
A
230 238Right-handed alpha
Helix 16
AB7
A
246 279Right-handed alpha
Helix 17
AB8
A
279 289Right-handed alpha
Helix 18
AB9
A
289 306Right-handed alpha
Helix 19
AC1
A
336 340Right-handed alpha
Helix 20
AC2
A
374 393Right-handed alpha
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There are 4 sheets in PDB entry 6BLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
331 335parallel
Strand 4
A
310 315anti-parallel
Strand 5
A
80 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
416 418anti-parallel
Strand 3
A
397 398anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
324 326anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
411 414anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il