Analysis of interatomic Contacts of Structural Units in PDB entry:
6BM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BM5 entry

There is 1 chain in PDB entry 6BM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 901ASP 1225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6BM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
905 912Right-handed alpha
Helix 2
AA2
A
917 921Right-handed 310
Helix 3
AA3
A
937 943Right-handed alpha
Helix 4
AA4
A
947 954Right-handed alpha
Helix 5
AA5
A
961 966Right-handed 310
Helix 6
AA6
A
969 991Right-handed alpha
Helix 7
AA7
A
1042 1047Right-handed 310
Helix 8
AA8
A
1049 1053Right-handed 310
Helix 9
AA9
A
1068 1079Right-handed alpha
Helix 10
AB1
A
1081 1110Right-handed alpha
Helix 11
AB2
A
1121 1127Right-handed alpha
Helix 12
AB3
A
1144 1146Right-handed 310
Helix 13
AB4
A
1147 1155Right-handed alpha
Helix 14
AB5
A
1156 1162Right-handed alpha
Helix 15
AB6
A
1196 1208Right-handed alpha
Helix 16
AB7
A
1210 1218Right-handed alpha
Helix 17
AB8
A
1219 1222Right-handed 310
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There are 3 sheets in PDB entry 6BM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 935first strand
Strand 2
A
996 1007anti-parallel
Strand 3
A
1010 1014anti-parallel
Strand 4
A
1022 1027anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 935first strand
Strand 2
A
996 1007anti-parallel
Strand 3
A
1056 1064anti-parallel
Strand 4
A
1176 1181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1164 1165first strand
Strand 2
A
1171 1172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il