Analysis of interatomic Contacts of Structural Units in PDB entry:
6BM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BM9 entry

There are 4 chains in PDB entry 6BM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	ASN 261
B	GLU 32	THR 260
C	GLU 32	THR 260
D	GLU 32	ASN 261

There are 28 helices in PDB entry 6BM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	39	Right-handed 310
Helix 2	AA2	A	88	103	Right-handed alpha
Helix 3	AA3	A	121	128	Right-handed alpha
Helix 4	AA4	A	136	146	Right-handed alpha
Helix 5	AA5	A	198	200	Right-handed 310
Helix 6	AA6	A	218	230	Right-handed alpha
Helix 7	AA7	A	246	259	Right-handed alpha
Helix 8	AA8	B	35	39	Right-handed 310
Helix 9	AA9	B	88	103	Right-handed alpha
Helix 10	AB1	B	121	129	Right-handed alpha
Helix 11	AB2	B	136	145	Right-handed alpha
Helix 12	AB3	B	198	200	Right-handed 310
Helix 13	AB4	B	218	230	Right-handed alpha
Helix 14	AB5	B	246	260	Right-handed alpha
Helix 15	AB6	C	35	39	Right-handed 310
Helix 16	AB7	C	87	103	Right-handed alpha
Helix 17	AB8	C	121	129	Right-handed alpha
Helix 18	AB9	C	136	145	Right-handed alpha
Helix 19	AC1	C	198	200	Right-handed 310
Helix 20	AC2	C	218	230	Right-handed alpha
Helix 21	AC3	C	246	258	Right-handed alpha
Helix 22	AC4	D	35	39	Right-handed 310
Helix 23	AC5	D	88	103	Right-handed alpha
Helix 24	AC6	D	121	129	Right-handed alpha
Helix 25	AC7	D	136	145	Right-handed alpha
Helix 26	AC8	D	198	200	Right-handed 310
Helix 27	AC9	D	218	230	Right-handed alpha
Helix 28	AD1	D	246	260	Right-handed alpha

There are 8 sheets in PDB entry 6BM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	79	83	anti-parallel
Strand 5	A	107	111	parallel
Strand 6	B	132	135	parallel
Strand 7	B	153	154	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	132	135	parallel
Strand 3	B	107	111	parallel
Strand 4	B	79	83	parallel
Strand 5	B	70	76	anti-parallel
Strand 6	B	53	58	anti-parallel
Strand 7	B	44	50	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	170	173	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	193	197	anti-parallel
Strand 5	A	235	238	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	170	173	anti-parallel
Strand 3	B	185	188	anti-parallel
Strand 4	B	193	197	anti-parallel
Strand 5	B	235	238	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	53	59	anti-parallel
Strand 3	C	68	76	anti-parallel
Strand 4	C	79	83	anti-parallel
Strand 5	C	107	111	parallel
Strand 6	D	132	135	parallel
Strand 7	D	153	154	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	132	135	parallel
Strand 3	D	107	111	parallel
Strand 4	D	79	83	parallel
Strand 5	D	70	76	anti-parallel
Strand 6	D	53	58	anti-parallel
Strand 7	D	44	50	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	167	first strand
Strand 2	C	170	174	anti-parallel
Strand 3	C	185	188	anti-parallel
Strand 4	C	193	197	anti-parallel
Strand 5	C	235	238	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	167	first strand
Strand 2	D	170	173	anti-parallel
Strand 3	D	185	188	anti-parallel
Strand 4	D	193	197	anti-parallel
Strand 5	D	235	238	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BM9