Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMA entry

There are 2 chains in PDB entry 6BMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 258
B
 ALA 0LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6BMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 21Right-handed alpha
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
28 31Right-handed 310
Helix 4
AA4
A
39 45Right-handed alpha
Helix 5
AA5
A
72 83Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
123 134Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
146 160Right-handed alpha
Helix 10
AB1
A
170 181Right-handed alpha
Helix 11
AB2
A
200 206Right-handed alpha
Helix 12
AB3
A
207 209Right-handed 310
Helix 13
AB4
A
223 234Right-handed alpha
Helix 14
AB5
A
241 247Right-handed alpha
Helix 15
AB6
A
249 258Right-handed alpha
Helix 16
AB7
B
1 21Right-handed alpha
Helix 17
AB8
B
22 27Right-handed alpha
Helix 18
AB9
B
28 31Right-handed 310
Helix 19
AC1
B
39 45Right-handed alpha
Helix 20
AC2
B
72 83Right-handed alpha
Helix 21
AC3
B
100 110Right-handed alpha
Helix 22
AC4
B
123 134Right-handed alpha
Helix 23
AC5
B
143 145Right-handed 310
Helix 24
AC6
B
146 160Right-handed alpha
Helix 25
AC7
B
170 181Right-handed alpha
Helix 26
AC8
B
200 206Right-handed alpha
Helix 27
AC9
B
207 209Right-handed 310
Helix 28
AD1
B
223 234Right-handed alpha
Helix 29
AD2
B
241 246Right-handed alpha
Helix 30
AD3
B
249 257Right-handed alpha
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There are 4 sheets in PDB entry 6BMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
87 91parallel
Strand 3
A
115 118parallel
Strand 4
A
137 141parallel
Strand 5
A
163 168parallel
Strand 6
A
184 188parallel
Strand 7
A
214 218parallel
Strand 8
A
237 240parallel
Strand 9
A
52 57parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
65 66anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
87 91parallel
Strand 3
B
115 118parallel
Strand 4
B
137 141parallel
Strand 5
B
163 168parallel
Strand 6
B
184 188parallel
Strand 7
B
214 218parallel
Strand 8
B
237 240parallel
Strand 9
B
53 57parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
65 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il