Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMB entry

There is 1 chain in PDB entry 6BMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 90GLN 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6BMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 119Right-handed alpha
Helix 2
AA2
A
128 130Right-handed 310
Helix 3
AA3
A
134 146Right-handed alpha
Helix 4
AA4
A
156 160Right-handed 310
Helix 5
AA5
A
166 181Right-handed alpha
Helix 6
AA6
A
189 200Right-handed alpha
Helix 7
AA7
A
221 235Right-handed alpha
Helix 8
AA8
A
250 262Right-handed alpha
Helix 9
AA9
A
272 275Right-handed 310
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
281 286Right-handed alpha
Helix 12
AB3
A
306 313Right-handed alpha
Helix 13
AB4
A
315 319Right-handed 310
Helix 14
AB5
A
337 349Right-handed alpha
Helix 15
AB6
A
362 370Right-handed alpha
Helix 16
AB7
A
384 392Right-handed alpha
Helix 17
AB8
A
396 403Right-handed alpha
Helix 18
AB9
A
422 435Right-handed alpha
Helix 19
AC1
A
462 475Right-handed alpha
Helix 20
AC2
A
492 497Right-handed alpha
Helix 21
AC3
A
502 506Right-handed 310
Helix 22
AC4
A
535 540Right-handed 310
Helix 23
AC5
A
555 564Right-handed alpha
Helix 24
AC6
A
570 588Right-handed alpha
Helix 25
AC7
A
592 604Right-handed alpha
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There are 3 sheets in PDB entry 6BMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 271first strand
Strand 2
A
239 245parallel
Strand 3
A
208 214parallel
Strand 4
A
184 188parallel
Strand 5
A
150 153parallel
Strand 6
A
122 126parallel
Strand 7
A
95 100parallel
Strand 8
A
289 291parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 359first strand
Strand 2
A
324 330parallel
Strand 3
A
375 380parallel
Strand 4
A
407 411anti-parallel
Strand 5
A
416 420anti-parallel
Strand 6
A
394 395parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
456 459parallel
Strand 3
A
515 519parallel
Strand 4
A
542 547parallel
Strand 5
A
567 569parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il