Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMC entry

There are 2 chains in PDB entry 6BMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 389
B
 MET 1SER 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6BMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
40 57Right-handed alpha
Helix 4
AA4
A
75 98Right-handed alpha
Helix 5
AA5
A
149 167Right-handed alpha
Helix 6
AA6
A
190 196Right-handed alpha
Helix 7
AA7
A
216 220Right-handed 310
Helix 8
AA8
A
224 232Right-handed alpha
Helix 9
AA9
A
246 258Right-handed alpha
Helix 10
AB1
A
276 292Right-handed alpha
Helix 11
AB2
A
317 336Right-handed alpha
Helix 12
AB3
A
357 364Right-handed 310
Helix 13
AB4
A
377 387Right-handed alpha
Helix 14
AB5
B
2 11Right-handed alpha
Helix 15
AB6
B
21 34Right-handed alpha
Helix 16
AB7
B
40 56Right-handed alpha
Helix 17
AB8
B
75 98Right-handed alpha
Helix 18
AB9
B
149 167Right-handed alpha
Helix 19
AC1
B
189 196Right-handed alpha
Helix 20
AC2
B
216 220Right-handed 310
Helix 21
AC3
B
224 232Right-handed alpha
Helix 22
AC4
B
246 258Right-handed alpha
Helix 23
AC5
B
276 292Right-handed alpha
Helix 24
AC6
B
302 306Right-handed 310
Helix 25
AC7
B
317 336Right-handed alpha
Helix 26
AC8
B
362 366Right-handed 310
Helix 27
AC9
B
377 387Right-handed alpha
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There are 5 sheets in PDB entry 6BMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
101 106parallel
Strand 3
A
60 65parallel
Strand 4
A
338 345parallel
Strand 5
A
296 299parallel
Strand 6
A
266 270parallel
Strand 7
A
237 241parallel
Strand 8
A
214 215parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
205 207anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
314 315anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
101 106parallel
Strand 3
B
60 65parallel
Strand 4
B
338 345parallel
Strand 5
B
296 299parallel
Strand 6
B
266 270parallel
Strand 7
B
237 241parallel
Strand 8
B
214 215parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
205 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il