Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMF entry

There are 6 chains in PDB entry 6BMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 116GLY 433
B
 ASN 112ASN 437
C
 ASN 112ASN 437
D
 ASN 112ASN 437
E
 GLU 126GLY 433
G
 ASP 165LEU 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6BMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 155Right-handed alpha
Helix 2
AA2
A
178 190Right-handed alpha
Helix 3
AA3
A
208 224Right-handed alpha
Helix 4
AA4
A
233 237Right-handed 310
Helix 5
AA5
A
245 260Right-handed alpha
Helix 6
AA6
A
278 282Right-handed 310
Helix 7
AA7
A
283 290Right-handed alpha
Helix 8
AA8
A
300 312Right-handed alpha
Helix 9
AA9
A
320 331Right-handed alpha
Helix 10
AB1
A
335 356Right-handed alpha
Helix 11
AB2
A
403 413Right-handed alpha
Helix 12
AB3
A
420 433Right-handed alpha
Helix 13
AB4
B
113 119Right-handed alpha
Helix 14
AB5
B
120 122Right-handed 310
Helix 15
AB6
B
138 155Right-handed alpha
Helix 16
AB7
B
178 190Right-handed alpha
Helix 17
AB8
B
208 224Right-handed alpha
Helix 18
AB9
B
234 237Right-handed 310
Helix 19
AC1
B
245 261Right-handed alpha
Helix 20
AC2
B
278 282Right-handed 310
Helix 21
AC3
B
283 290Right-handed alpha
Helix 22
AC4
B
300 312Right-handed alpha
Helix 23
AC5
B
320 331Right-handed alpha
Helix 24
AC6
B
335 356Right-handed alpha
Helix 25
AC7
B
403 413Right-handed alpha
Helix 26
AC8
B
420 433Right-handed alpha
Helix 27
AC9
C
113 119Right-handed alpha
Helix 28
AD1
C
120 122Right-handed 310
Helix 29
AD2
C
131 135Right-handed 310
Helix 30
AD3
C
138 155Right-handed alpha
Helix 31
AD4
C
178 190Right-handed alpha
Helix 32
AD5
C
211 224Right-handed alpha
Helix 33
AD6
C
233 237Right-handed 310
Helix 34
AD7
C
245 261Right-handed alpha
Helix 35
AD8
C
278 282Right-handed 310
Helix 36
AD9
C
283 290Right-handed alpha
Helix 37
AE1
C
300 312Right-handed alpha
Helix 38
AE2
C
320 331Right-handed alpha
Helix 39
AE3
C
335 348Right-handed alpha
Helix 40
AE4
C
348 356Right-handed alpha
Helix 41
AE5
C
402 413Right-handed alpha
Helix 42
AE6
C
420 433Right-handed alpha
Helix 43
AE7
D
113 119Right-handed alpha
Helix 44
AE8
D
120 122Right-handed 310
Helix 45
AE9
D
138 155Right-handed alpha
Helix 46
AF1
D
178 190Right-handed alpha
Helix 47
AF2
D
210 222Right-handed alpha
Helix 48
AF3
D
234 237Right-handed 310
Helix 49
AF4
D
245 261Right-handed alpha
Helix 50
AF5
D
278 282Right-handed 310
Helix 51
AF6
D
283 290Right-handed alpha
Helix 52
AF7
D
300 312Right-handed alpha
Helix 53
AF8
D
320 331Right-handed alpha
Helix 54
AF9
D
335 348Right-handed alpha
Helix 55
AG1
D
348 356Right-handed alpha
Helix 56
AG2
D
403 413Right-handed alpha
Helix 57
AG3
D
420 433Right-handed alpha
Helix 58
AG4
E
138 154Right-handed alpha
Helix 59
AG5
E
178 189Right-handed alpha
Helix 60
AG6
E
211 223Right-handed alpha
Helix 61
AG7
E
233 237Right-handed 310
Helix 62
AG8
E
245 261Right-handed alpha
Helix 63
AG9
E
278 282Right-handed 310
Helix 64
AH1
E
283 290Right-handed alpha
Helix 65
AH2
E
300 312Right-handed alpha
Helix 66
AH3
E
320 331Right-handed alpha
Helix 67
AH4
E
335 356Right-handed alpha
Helix 68
AH5
E
402 413Right-handed alpha
Helix 69
AH6
E
420 433Right-handed alpha
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There are 7 sheets in PDB entry 6BMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
170 172parallel
Strand 3
A
293 295parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
227 230parallel
Strand 3
A
271 273parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
227 232parallel
Strand 3
B
270 276parallel
Strand 4
B
170 172parallel
Strand 5
B
293 295parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
227 231parallel
Strand 3
C
270 276parallel
Strand 4
C
170 172parallel
Strand 5
C
293 295parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 195first strand
Strand 2
D
227 232parallel
Strand 3
D
270 276parallel
Strand 4
D
170 172parallel
Strand 5
D
293 295parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
170 172first strand
Strand 2
E
293 295parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 195first strand
Strand 2
E
227 229parallel
Strand 3
E
270 272parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il