Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMM entry

There are 4 chains in PDB entry 6BMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 7HIS 155
A
 PRO 157LEU 296
B
 ARG 8HIS 155
B
 PRO 157VAL 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6BMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
16 35Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
47 75Right-handed alpha
Helix 5
AA5
A
81 85Right-handed 310
Helix 6
AA6
A
87 97Right-handed alpha
Helix 7
AA7
A
99 112Right-handed alpha
Helix 8
AA8
A
167 198Right-handed alpha
Helix 9
AA9
A
203 238Right-handed alpha
Helix 10
AB1
A
240 246Right-handed alpha
Helix 11
AB2
A
262 272Right-handed alpha
Helix 12
AB3
A
274 278Right-handed 310
Helix 13
AB4
B
9 16Right-handed alpha
Helix 14
AB5
B
16 35Right-handed alpha
Helix 15
AB6
B
42 46Right-handed 310
Helix 16
AB7
B
47 75Right-handed alpha
Helix 17
AB8
B
81 85Right-handed 310
Helix 18
AB9
B
87 97Right-handed alpha
Helix 19
AC1
B
99 112Right-handed alpha
Helix 20
AC2
B
167 198Right-handed alpha
Helix 21
AC3
B
203 238Right-handed alpha
Helix 22
AC4
B
240 246Right-handed alpha
Helix 23
AC5
B
262 272Right-handed alpha
Helix 24
AC6
B
274 278Right-handed 310
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There are 8 sheets in PDB entry 6BMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
249 250anti-parallel
Strand 3
A
253 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
133 134anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
161 163anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
249 250anti-parallel
Strand 3
B
253 254anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
133 134anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
147 149anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
161 163anti-parallel
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