Analysis of interatomic Contacts of Structural Units in PDB entry:
6BMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BMS entry

There are 2 chains in PDB entry 6BMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1GLU 288
D
 CYS 3SER 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6BMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
9 28Right-handed alpha
Helix 3
AA3
A
28 34Right-handed alpha
Helix 4
AA4
A
38 65Right-handed alpha
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
87 99Right-handed alpha
Helix 7
AA7
A
154 185Right-handed alpha
Helix 8
AA8
A
196 224Right-handed alpha
Helix 9
AA9
A
227 233Right-handed alpha
Helix 10
AB1
A
249 259Right-handed alpha
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
281 285Right-handed 310
Helix 13
AB4
D
4 9Right-handed alpha
Helix 14
AB5
D
10 30Right-handed alpha
Helix 15
AB6
D
39 66Right-handed alpha
Helix 16
AB7
D
72 76Right-handed 310
Helix 17
AB8
D
78 88Right-handed alpha
Helix 18
AB9
D
90 103Right-handed alpha
Helix 19
AC1
D
158 190Right-handed alpha
Helix 20
AC2
D
200 229Right-handed alpha
Helix 21
AC3
D
231 237Right-handed alpha
Helix 22
AC4
D
253 263Right-handed alpha
Helix 23
AC5
D
265 269Right-handed 310
Helix 24
AC6
D
285 289Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6BMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
134 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
148 150anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 133first strand
Strand 2
D
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 147first strand
Strand 2
D
152 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 241first strand
Strand 2
D
244 245anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il