Analysis of interatomic Contacts of Structural Units in PDB entry:
6BN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BN2 entry

There are 3 chains in PDB entry 6BN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 87
A
 ALA 89ASN 158
A
 ALA 160LYS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6BN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
86 88Right-handed 310
Helix 5
AA5
A
89 104Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
141 146Right-handed alpha
Helix 8
AA8
A
155 167Right-handed alpha
Helix 9
AA9
A
170 191Right-handed alpha
Helix 10
AB1
A
217 221Right-handed 310
Helix 11
AB2
A
223 230Right-handed 310
Helix 12
AB3
A
261 267Right-handed alpha
Helix 13
AB4
A
284 290Right-handed 310
Helix 14
AB5
A
291 304Right-handed alpha
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
319 331Right-handed alpha
Helix 17
AB8
A
333 337Right-handed 310
Helix 18
AB9
A
342 347Right-handed alpha
Helix 19
AC1
A
349 368Right-handed alpha
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There are 4 sheets in PDB entry 6BN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
250 260anti-parallel
Strand 3
A
109 117anti-parallel
Strand 4
A
51 54parallel
Strand 5
A
81 84parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
250 260anti-parallel
Strand 3
A
4 11anti-parallel
Strand 4
A
273 282anti-parallel
Strand 5
A
383 391anti-parallel
Strand 6
A
372 379anti-parallel
Strand 7
A
312 315parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il