Analysis of interatomic Contacts of Structural Units in PDB entry:
6BND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BND entry

There are 2 chains in PDB entry 6BND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 244ASP 578
B
 THR 244ASP 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6BND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
276 284Right-handed 310
Helix 2
AA2
A
290 299Right-handed alpha
Helix 3
AA3
A
314 323Right-handed alpha
Helix 4
AA4
A
332 339Right-handed 310
Helix 5
AA5
A
341 349Right-handed alpha
Helix 6
AA6
A
370 372Right-handed 310
Helix 7
AA7
A
380 384Right-handed 310
Helix 8
AA8
A
399 405Right-handed 310
Helix 9
AA9
A
407 414Right-handed alpha
Helix 10
AB1
A
432 436Right-handed 310
Helix 11
AB2
A
438 442Right-handed 310
Helix 12
AB3
A
457 485Right-handed alpha
Helix 13
AB4
A
505 507Right-handed 310
Helix 14
AB5
A
519 523Right-handed alpha
Helix 15
AB6
A
548 550Right-handed 310
Helix 16
AB7
A
551 560Right-handed alpha
Helix 17
AB8
A
564 568Right-handed 310
Helix 18
AB9
B
276 284Right-handed 310
Helix 19
AC1
B
290 299Right-handed alpha
Helix 20
AC2
B
314 323Right-handed alpha
Helix 21
AC3
B
326 331Right-handed alpha
Helix 22
AC4
B
332 339Right-handed 310
Helix 23
AC5
B
341 349Right-handed alpha
Helix 24
AC6
B
370 372Right-handed 310
Helix 25
AC7
B
380 384Right-handed 310
Helix 26
AC8
B
399 405Right-handed 310
Helix 27
AC9
B
407 414Right-handed alpha
Helix 28
AD1
B
432 436Right-handed 310
Helix 29
AD2
B
438 442Right-handed 310
Helix 30
AD3
B
457 485Right-handed alpha
Helix 31
AD4
B
519 523Right-handed alpha
Helix 32
AD5
B
548 550Right-handed 310
Helix 33
AD6
B
551 560Right-handed alpha
Helix 34
AD7
B
564 568Right-handed 310
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There are 8 sheets in PDB entry 6BND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
562 563anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
527 531anti-parallel
Strand 3
A
490 496anti-parallel
Strand 4
A
265 271parallel
Strand 5
A
419 424parallel
Strand 6
A
352 357parallel
Strand 7
A
374 376parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
509 510anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
562 563anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
527 531anti-parallel
Strand 3
B
490 496anti-parallel
Strand 4
B
265 271parallel
Strand 5
B
419 424parallel
Strand 6
B
352 357parallel
Strand 7
B
374 376parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
524 525anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 505first strand
Strand 2
B
508 510anti-parallel
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