Analysis of interatomic Contacts of Structural Units in PDB entry:
6BNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BNE entry

There is 1 chain in PDB entry 6BNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 243ASP 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6BNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
276 284Right-handed 310
Helix 2
AA2
A
290 299Right-handed alpha
Helix 3
AA3
A
314 323Right-handed alpha
Helix 4
AA4
A
332 336Right-handed 310
Helix 5
AA5
A
341 350Right-handed alpha
Helix 6
AA6
A
370 372Right-handed 310
Helix 7
AA7
A
399 405Right-handed 310
Helix 8
AA8
A
407 414Right-handed alpha
Helix 9
AA9
A
432 436Right-handed 310
Helix 10
AB1
A
438 442Right-handed 310
Helix 11
AB2
A
457 485Right-handed alpha
Helix 12
AB3
A
548 550Right-handed 310
Helix 13
AB4
A
551 560Right-handed alpha
Helix 14
AB5
A
564 568Right-handed 310
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There are 4 sheets in PDB entry 6BNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
562 563anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
527 531anti-parallel
Strand 3
A
490 497anti-parallel
Strand 4
A
265 272parallel
Strand 5
A
419 424parallel
Strand 6
A
352 357parallel
Strand 7
A
374 376parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 505first strand
Strand 2
A
508 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il