Analysis of interatomic Contacts of Structural Units in PDB entry:
6BNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BNL entry

There are 7 chains in PDB entry 6BNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	TYR 278
B	GLN 2	ARG 97
C	THR 1	PRO 205
D	ALA 2	ASP 247
E	ASN 7	TRP 279
F	PRO 5	ARG 97
G	THR 1	ASP 162

There are 24 helices in PDB entry 6BNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	89	Right-handed alpha
Helix 2	AA2	A	140	142	Right-handed 310
Helix 3	AA3	A	143	153	Right-handed alpha
Helix 4	AA4	A	153	166	Right-handed alpha
Helix 5	AA5	A	166	179	Right-handed alpha
Helix 6	AA6	A	179	184	Right-handed alpha
Helix 7	AA7	C	81	85	Right-handed 310
Helix 8	AA8	C	169	172	Right-handed 310
Helix 9	AA9	C	188	192	Right-handed 310
Helix 10	AB1	D	83	87	Right-handed 310
Helix 11	AB2	D	134	142	Right-handed alpha
Helix 12	AB3	D	201	206	Right-handed alpha
Helix 13	AB4	E	59	89	Right-handed alpha
Helix 14	AB5	E	140	142	Right-handed 310
Helix 15	AB6	E	143	153	Right-handed alpha
Helix 16	AB7	E	153	166	Right-handed alpha
Helix 17	AB8	E	166	179	Right-handed alpha
Helix 18	AB9	E	179	184	Right-handed alpha
Helix 19	AC1	G	81	85	Right-handed 310
Helix 20	AC2	G	169	172	Right-handed 310
Helix 21	AC3	G	188	193	Right-handed alpha
Helix 22	AC4	H	83	87	Right-handed 310
Helix 23	AC5	H	134	142	Right-handed alpha
Helix 24	AC6	H	201	206	Right-handed alpha

There are 32 sheets in PDB entry 6BNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	24	32	anti-parallel
Strand 4	A	8	18	anti-parallel
Strand 5	A	96	106	anti-parallel
Strand 6	A	112	120	anti-parallel
Strand 7	A	123	129	anti-parallel
Strand 8	A	132	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	245	250	anti-parallel
Strand 4	A	233	234	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	245	250	anti-parallel
Strand 4	A	238	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	262	267	anti-parallel
Strand 4	A	275	277	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	62	67	anti-parallel
Strand 5	C	53	58	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	110	115	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	31	37	anti-parallel
Strand 5	C	43	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	110	115	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	104	106	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	173	182	anti-parallel
Strand 3	C	137	142	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	D	127	132	anti-parallel
Strand 6	D	143	153	anti-parallel
Strand 7	D	191	200	anti-parallel
Strand 8	D	173	175	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	173	182	anti-parallel
Strand 3	C	137	142	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	D	127	132	anti-parallel
Strand 6	D	143	153	anti-parallel
Strand 7	D	191	200	anti-parallel
Strand 8	D	180	181	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	68	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	112	117	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	49	anti-parallel
Strand 6	D	56	57	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	112	117	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	102	108	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	158	164	anti-parallel
Strand 3	D	210	217	anti-parallel
Strand 4	D	236	243	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	24	32	anti-parallel
Strand 4	E	8	18	anti-parallel
Strand 5	E	96	106	anti-parallel
Strand 6	E	112	120	anti-parallel
Strand 7	E	123	129	anti-parallel
Strand 8	E	132	135	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	194	first strand
Strand 2	E	206	213	anti-parallel
Strand 3	E	245	251	anti-parallel
Strand 4	E	233	234	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	194	first strand
Strand 2	E	206	213	anti-parallel
Strand 3	E	245	251	anti-parallel
Strand 4	E	238	239	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	228	first strand
Strand 2	E	218	224	anti-parallel
Strand 3	E	262	267	anti-parallel
Strand 4	E	275	277	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	23	30	anti-parallel
Strand 3	F	62	68	anti-parallel
Strand 4	F	50	51	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	23	30	anti-parallel
Strand 3	F	62	68	anti-parallel
Strand 4	F	55	56	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	40	first strand
Strand 2	F	79	83	anti-parallel
Strand 3	F	91	94	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	72	77	anti-parallel
Strand 4	G	62	67	anti-parallel
Strand 5	G	53	58	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	110	115	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	31	37	anti-parallel
Strand 5	G	43	49	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	110	115	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	104	106	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	160	first strand
Strand 2	G	173	182	anti-parallel
Strand 3	G	137	142	anti-parallel
Strand 4	G	124	130	anti-parallel
Strand 5	H	127	132	anti-parallel
Strand 6	H	143	153	anti-parallel
Strand 7	H	191	200	anti-parallel
Strand 8	H	173	175	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	168	first strand
Strand 2	G	173	182	anti-parallel
Strand 3	G	137	142	anti-parallel
Strand 4	G	124	130	anti-parallel
Strand 5	H	127	132	anti-parallel
Strand 6	H	143	153	anti-parallel
Strand 7	H	191	200	anti-parallel
Strand 8	H	180	181	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	66	68	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	107	117	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	31	37	anti-parallel
Strand 5	H	44	49	anti-parallel
Strand 6	H	56	57	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	107	117	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	158	164	anti-parallel
Strand 3	H	210	217	anti-parallel
Strand 4	H	236	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BNL