Analysis of interatomic Contacts of Structural Units in PDB entry:
6BNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BNY entry

There is 1 chain in PDB entry 6BNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 657
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 62Right-handed alpha
Helix 2
AA2
A
94 100Right-handed alpha
Helix 3
AA3
A
101 104Right-handed 310
Helix 4
AA4
A
108 130Right-handed alpha
Helix 5
AA5
A
176 180Right-handed 310
Helix 6
AA6
A
204 217Right-handed alpha
Helix 7
AA7
A
230 239Right-handed alpha
Helix 8
AA8
A
270 285Right-handed alpha
Helix 9
AA9
A
288 292Right-handed 310
Helix 10
AB1
A
294 307Right-handed alpha
Helix 11
AB2
A
331 344Right-handed alpha
Helix 12
AB3
A
366 370Right-handed 310
Helix 13
AB4
A
407 479Right-handed alpha
Helix 14
AB5
A
495 527Right-handed alpha
Helix 15
AB6
A
535 539Right-handed 310
Helix 16
AB7
A
547 573Right-handed alpha
Helix 17
AB8
A
576 604Right-handed alpha
Helix 18
AB9
A
606 647Right-handed alpha
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There are 4 sheets in PDB entry 6BNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
35 38anti-parallel
Strand 4
A
82 86anti-parallel
Strand 5
A
70 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
149 155anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
257 260anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
309 315anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
357 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il