Analysis of interatomic Contacts of Structural Units in PDB entry:
6BOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BOG entry

There are 2 chains in PDB entry 6BOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLN 968
B	PRO 2	GLN 968

There are 83 helices in PDB entry 6BOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	17	Right-handed 310
Helix 2	AA2	A	100	102	Right-handed 310
Helix 3	AA3	A	110	117	Right-handed alpha
Helix 4	AA4	A	122	141	Right-handed alpha
Helix 5	AA5	A	155	167	Right-handed alpha
Helix 6	AA6	A	182	197	Right-handed alpha
Helix 7	AA7	A	208	222	Right-handed alpha
Helix 8	AA8	A	231	242	Right-handed alpha
Helix 9	AA9	A	244	248	Right-handed 310
Helix 10	AB1	A	255	260	Right-handed alpha
Helix 11	AB2	A	262	271	Right-handed alpha
Helix 12	AB3	A	281	285	Right-handed 310
Helix 13	AB4	A	295	303	Right-handed alpha
Helix 14	AB5	A	320	323	Right-handed 310
Helix 15	AB6	A	324	332	Right-handed alpha
Helix 16	AB7	A	338	361	Right-handed alpha
Helix 17	AB8	A	366	377	Right-handed alpha
Helix 18	AB9	A	381	392	Right-handed alpha
Helix 19	AC1	A	395	409	Right-handed alpha
Helix 20	AC2	A	441	455	Right-handed alpha
Helix 21	AC3	A	459	469	Right-handed alpha
Helix 22	AC4	A	470	472	Right-handed 310
Helix 23	AC5	A	473	478	Right-handed alpha
Helix 24	AC6	A	483	487	Right-handed 310
Helix 25	AC7	A	488	501	Right-handed alpha
Helix 26	AC8	A	512	528	Right-handed alpha
Helix 27	AC9	A	539	552	Right-handed alpha
Helix 28	AD1	A	586	596	Right-handed alpha
Helix 29	AD2	A	616	627	Right-handed alpha
Helix 30	AD3	A	638	656	Right-handed alpha
Helix 31	AD4	A	662	683	Right-handed alpha
Helix 32	AD5	A	686	695	Right-handed alpha
Helix 33	AD6	A	695	710	Right-handed alpha
Helix 34	AD7	A	712	727	Right-handed alpha
Helix 35	AD8	A	764	771	Right-handed alpha
Helix 36	AD9	A	781	794	Right-handed alpha
Helix 37	AE1	A	827	835	Right-handed 310
Helix 38	AE2	A	857	864	Right-handed alpha
Helix 39	AE3	A	869	879	Right-handed alpha
Helix 40	AE4	A	880	926	Right-handed alpha
Helix 41	AE5	A	932	951	Right-handed alpha
Helix 42	AE6	B	14	18	Right-handed 310
Helix 43	AE7	B	100	102	Right-handed 310
Helix 44	AE8	B	110	117	Right-handed alpha
Helix 45	AE9	B	122	141	Right-handed alpha
Helix 46	AF1	B	155	167	Right-handed alpha
Helix 47	AF2	B	182	197	Right-handed alpha
Helix 48	AF3	B	208	210	Right-handed 310
Helix 49	AF4	B	211	224	Right-handed alpha
Helix 50	AF5	B	231	242	Right-handed alpha
Helix 51	AF6	B	244	248	Right-handed 310
Helix 52	AF7	B	255	260	Right-handed alpha
Helix 53	AF8	B	262	272	Right-handed alpha
Helix 54	AF9	B	281	285	Right-handed 310
Helix 55	AG1	B	293	306	Right-handed alpha
Helix 56	AG2	B	320	323	Right-handed 310
Helix 57	AG3	B	324	332	Right-handed alpha
Helix 58	AG4	B	338	361	Right-handed alpha
Helix 59	AG5	B	366	377	Right-handed alpha
Helix 60	AG6	B	381	392	Right-handed alpha
Helix 61	AG7	B	395	409	Right-handed alpha
Helix 62	AG8	B	441	455	Right-handed alpha
Helix 63	AG9	B	459	468	Right-handed alpha
Helix 64	AH1	B	469	472	Right-handed 310
Helix 65	AH2	B	473	478	Right-handed alpha
Helix 66	AH3	B	483	487	Right-handed 310
Helix 67	AH4	B	488	501	Right-handed alpha
Helix 68	AH5	B	512	528	Right-handed alpha
Helix 69	AH6	B	539	552	Right-handed alpha
Helix 70	AH7	B	586	596	Right-handed alpha
Helix 71	AH8	B	616	627	Right-handed alpha
Helix 72	AH9	B	638	656	Right-handed alpha
Helix 73	AI1	B	662	683	Right-handed alpha
Helix 74	AI2	B	686	695	Right-handed alpha
Helix 75	AI3	B	695	710	Right-handed alpha
Helix 76	AI4	B	712	727	Right-handed alpha
Helix 77	AI5	B	764	771	Right-handed alpha
Helix 78	AI6	B	781	794	Right-handed alpha
Helix 79	AI7	B	827	835	Right-handed 310
Helix 80	AI8	B	857	864	Right-handed alpha
Helix 81	AI9	B	869	879	Right-handed alpha
Helix 82	AJ1	B	880	926	Right-handed alpha
Helix 83	AJ2	B	932	952	Right-handed alpha

There are 12 sheets in PDB entry 6BOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	19	25	anti-parallel
Strand 4	A	8	11	anti-parallel
Strand 5	A	50	52	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	68	77	anti-parallel
Strand 3	A	80	87	anti-parallel
Strand 4	A	92	98	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	251	254	parallel
Strand 3	A	203	206	parallel
Strand 4	A	276	279	parallel
Strand 5	A	309	312	parallel
Strand 6	A	172	175	parallel
Strand 7	A	417	418	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	438	first strand
Strand 2	A	606	613	parallel
Strand 3	A	577	580	parallel
Strand 4	A	506	510	parallel
Strand 5	A	559	563	parallel
Strand 6	A	531	534	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	737	741	anti-parallel
Strand 3	A	759	762	anti-parallel
Strand 4	A	775	776	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	805	first strand
Strand 2	A	954	966	parallel
Strand 3	A	814	823	anti-parallel
Strand 4	A	839	845	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	29	33	anti-parallel
Strand 3	B	20	25	anti-parallel
Strand 4	B	8	11	anti-parallel
Strand 5	B	50	52	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	68	77	anti-parallel
Strand 3	B	80	87	anti-parallel
Strand 4	B	92	98	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	251	254	parallel
Strand 3	B	203	206	parallel
Strand 4	B	276	279	parallel
Strand 5	B	308	312	parallel
Strand 6	B	172	175	parallel
Strand 7	B	417	418	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	438	first strand
Strand 2	B	606	613	parallel
Strand 3	B	577	580	parallel
Strand 4	B	506	510	parallel
Strand 5	B	559	563	parallel
Strand 6	B	531	533	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	738	741	anti-parallel
Strand 3	B	759	762	anti-parallel
Strand 4	B	774	776	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	839	845	first strand
Strand 2	B	814	823	anti-parallel
Strand 3	B	954	966	anti-parallel
Strand 4	B	800	805	parallel
Strand 5	B	865	866	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BOG