Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BPB entry

There are 2 chains in PDB entry 6BPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20ARG 237
B
 GLY 24ASN 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6BPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
106 110Right-handed 310
Helix 3
AA3
A
180 182Right-handed 310
Helix 4
AA4
A
210 212Right-handed 310
Helix 5
AA5
A
224 227Right-handed 310
Helix 6
AA6
B
144 150Right-handed alpha
Helix 7
AA7
B
206 211Right-handed alpha
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There are 11 sheets in PDB entry 6BPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
87 92anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
131 135parallel
Strand 3
A
111 118anti-parallel
Strand 4
A
52 59anti-parallel
Strand 5
A
63 70anti-parallel
Strand 6
A
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
131 135parallel
Strand 3
A
111 118anti-parallel
Strand 4
A
124 127anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
198 208anti-parallel
Strand 4
A
187 189anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
198 208anti-parallel
Strand 4
A
193 195anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
228 233anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
94 99anti-parallel
Strand 4
B
86 91anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
125 129parallel
Strand 3
B
108 113anti-parallel
Strand 4
B
57 62anti-parallel
Strand 5
B
69 73anti-parallel
Strand 6
B
77 78anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
125 129parallel
Strand 3
B
108 113anti-parallel
Strand 4
B
120 121anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
152 162anti-parallel
Strand 3
B
196 205anti-parallel
Strand 4
B
182 186anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
214 220anti-parallel
Strand 4
B
228 233anti-parallel
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