Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BPC entry

There are 6 chains in PDB entry 6BPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 171	GLU 466
B	GLU 20	ARG 237
C	GLY 24	ASN 235
D	THR 171	LEU 461
E	GLU 20	ARG 237
F	ASP 25	VAL 53

There are 34 helices in PDB entry 6BPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	211	Right-handed alpha
Helix 2	AA2	A	212	216	Right-handed 310
Helix 3	AA3	A	217	240	Right-handed alpha
Helix 4	AA4	A	240	256	Right-handed alpha
Helix 5	AA5	A	256	261	Right-handed alpha
Helix 6	AA6	A	266	288	Right-handed alpha
Helix 7	AA7	A	289	308	Right-handed alpha
Helix 8	AA8	A	318	335	Right-handed alpha
Helix 9	AA9	A	336	362	Right-handed alpha
Helix 10	AB1	A	368	407	Right-handed alpha
Helix 11	AB2	A	415	464	Right-handed alpha
Helix 12	AB3	B	47	51	Right-handed 310
Helix 13	AB4	B	81	84	Right-handed 310
Helix 14	AB5	B	106	110	Right-handed 310
Helix 15	AB6	B	180	182	Right-handed 310
Helix 16	AB7	C	144	149	Right-handed alpha
Helix 17	AB8	C	206	210	Right-handed alpha
Helix 18	AB9	D	196	210	Right-handed alpha
Helix 19	AC1	D	212	215	Right-handed 310
Helix 20	AC2	D	216	240	Right-handed alpha
Helix 21	AC3	D	240	256	Right-handed alpha
Helix 22	AC4	D	256	263	Right-handed alpha
Helix 23	AC5	D	266	289	Right-handed alpha
Helix 24	AC6	D	289	308	Right-handed alpha
Helix 25	AC7	D	318	335	Right-handed alpha
Helix 26	AC8	D	336	362	Right-handed alpha
Helix 27	AC9	D	369	408	Right-handed alpha
Helix 28	AD1	D	415	461	Right-handed alpha
Helix 29	AD2	E	47	51	Right-handed 310
Helix 30	AD3	E	81	84	Right-handed 310
Helix 31	AD4	E	106	110	Right-handed 310
Helix 32	AD5	E	180	182	Right-handed 310
Helix 33	AD6	F	144	151	Right-handed alpha
Helix 34	AD7	F	206	210	Right-handed alpha

There are 24 sheets in PDB entry 6BPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	188	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	413	414	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	97	102	anti-parallel
Strand 4	B	87	92	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	52	58	anti-parallel
Strand 5	B	64	70	anti-parallel
Strand 6	B	77	79	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	124	127	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	159	169	anti-parallel
Strand 3	B	198	208	anti-parallel
Strand 4	B	187	195	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	228	233	anti-parallel
Strand 4	E	228	234	anti-parallel
Strand 5	E	217	223	anti-parallel
Strand 6	E	175	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	86	91	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	125	129	parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	57	62	anti-parallel
Strand 5	C	69	73	anti-parallel
Strand 6	C	77	78	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	125	129	parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	120	121	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	152	162	anti-parallel
Strand 3	C	196	205	anti-parallel
Strand 4	C	182	186	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	214	220	anti-parallel
Strand 4	C	228	233	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	188	190	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	413	414	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	37	44	anti-parallel
Strand 3	E	97	102	anti-parallel
Strand 4	E	88	92	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	131	135	parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	52	58	anti-parallel
Strand 5	E	64	70	anti-parallel
Strand 6	E	77	79	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	131	135	parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	124	127	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	159	169	anti-parallel
Strand 3	E	198	208	anti-parallel
Strand 4	E	188	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	159	169	anti-parallel
Strand 3	E	198	208	anti-parallel
Strand 4	E	193	195	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	F	42	49	anti-parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	86	91	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	125	129	parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	57	62	anti-parallel
Strand 5	F	69	73	anti-parallel
Strand 6	F	77	78	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	125	129	parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	120	121	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	152	162	anti-parallel
Strand 3	F	196	205	anti-parallel
Strand 4	F	182	186	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	178	first strand
Strand 2	F	168	173	anti-parallel
Strand 3	F	214	220	anti-parallel
Strand 4	F	228	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPC