Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BPE entry

There are 6 chains in PDB entry 6BPE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 169	GLU 467
B	CYS 19	PRO 236
C	VAL 27	ILE 229
D	THR 169	SER 470
E	VAL 21	ARG 237
F	VAL 27	THR 55

There are 57 helices in PDB entry 6BPE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	212	Right-handed alpha
Helix 2	AA2	A	213	216	Right-handed 310
Helix 3	AA3	A	217	256	Right-handed alpha
Helix 4	AA4	A	256	264	Right-handed alpha
Helix 5	AA5	A	266	289	Right-handed alpha
Helix 6	AA6	A	289	307	Right-handed alpha
Helix 7	AA7	A	308	310	Right-handed 310
Helix 8	AA8	A	318	335	Right-handed alpha
Helix 9	AA9	A	336	362	Right-handed alpha
Helix 10	AB1	A	368	408	Right-handed alpha
Helix 11	AB2	A	415	467	Right-handed alpha
Helix 12	AB3	B	47	51	Right-handed 310
Helix 13	AB4	B	180	182	Right-handed 310
Helix 14	AB5	B	210	215	Right-handed alpha
Helix 15	AB6	C	145	151	Right-handed alpha
Helix 16	AB7	C	208	213	Right-handed 310
Helix 17	AB8	D	196	212	Right-handed alpha
Helix 18	AB9	D	217	225	Right-handed alpha
Helix 19	AC1	D	225	240	Right-handed alpha
Helix 20	AC2	D	240	256	Right-handed alpha
Helix 21	AC3	D	256	263	Right-handed alpha
Helix 22	AC4	D	266	289	Right-handed alpha
Helix 23	AC5	D	289	308	Right-handed alpha
Helix 24	AC6	D	318	333	Right-handed alpha
Helix 25	AC7	D	336	362	Right-handed alpha
Helix 26	AC8	D	367	408	Right-handed alpha
Helix 27	AC9	D	415	470	Right-handed alpha
Helix 28	AD1	E	106	110	Right-handed 310
Helix 29	AD2	E	180	182	Right-handed 310
Helix 30	AD3	E	210	215	Right-handed alpha
Helix 31	AD4	F	145	151	Right-handed alpha
Helix 32	AD5	F	207	213	Right-handed alpha
Helix 33	AD6	G	196	212	Right-handed alpha
Helix 34	AD7	G	217	239	Right-handed alpha
Helix 35	AD8	G	240	255	Right-handed alpha
Helix 36	AD9	G	256	262	Right-handed alpha
Helix 37	AE1	G	266	289	Right-handed alpha
Helix 38	AE2	G	289	307	Right-handed alpha
Helix 39	AE3	G	308	310	Right-handed 310
Helix 40	AE4	G	318	335	Right-handed alpha
Helix 41	AE5	G	336	361	Right-handed alpha
Helix 42	AE6	G	368	409	Right-handed alpha
Helix 43	AE7	G	415	469	Right-handed alpha
Helix 44	AE8	J	196	204	Right-handed alpha
Helix 45	AE9	J	204	209	Right-handed alpha
Helix 46	AF1	J	219	225	Right-handed alpha
Helix 47	AF2	J	225	240	Right-handed alpha
Helix 48	AF3	J	240	256	Right-handed alpha
Helix 49	AF4	J	256	263	Right-handed alpha
Helix 50	AF5	J	267	290	Right-handed alpha
Helix 51	AF6	J	292	309	Right-handed alpha
Helix 52	AF7	J	319	329	Right-handed alpha
Helix 53	AF8	J	329	335	Right-handed alpha
Helix 54	AF9	J	336	358	Right-handed alpha
Helix 55	AG1	J	368	409	Right-handed alpha
Helix 56	AG2	J	415	420	Right-handed alpha
Helix 57	AG3	J	421	465	Right-handed alpha

There are 30 sheets in PDB entry 6BPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	413	414	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	97	102	anti-parallel
Strand 4	B	87	92	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	52	58	anti-parallel
Strand 5	B	66	70	anti-parallel
Strand 6	B	77	78	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	131	135	parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	124	127	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	161	169	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	161	169	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	193	195	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	228	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	128	130	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	95	99	anti-parallel
Strand 3	C	86	89	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	68	73	anti-parallel
Strand 3	C	58	62	anti-parallel
Strand 4	C	109	113	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	197	206	anti-parallel
Strand 4	C	183	188	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	217	221	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	188	189	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	413	414	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	39	44	anti-parallel
Strand 3	E	97	102	anti-parallel
Strand 4	E	87	92	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	68	70	anti-parallel
Strand 3	E	52	58	anti-parallel
Strand 4	E	112	118	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	161	169	anti-parallel
Strand 3	E	198	206	anti-parallel
Strand 4	E	188	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	161	169	anti-parallel
Strand 3	E	198	206	anti-parallel
Strand 4	E	193	195	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	178	first strand
Strand 2	E	219	223	anti-parallel
Strand 3	E	228	231	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	43	49	anti-parallel
Strand 3	F	94	99	anti-parallel
Strand 4	F	87	89	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	126	130	parallel
Strand 3	F	109	114	anti-parallel
Strand 4	F	57	62	anti-parallel
Strand 5	F	69	73	anti-parallel
Strand 6	F	77	78	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	142	first strand
Strand 2	F	153	163	anti-parallel
Strand 3	F	197	206	anti-parallel
Strand 4	F	183	187	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	216	221	anti-parallel
Strand 3	F	226	231	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	316	317	first strand
Strand 2	G	413	414	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	41	first strand
Strand 2	H	97	102	anti-parallel
Strand 3	H	87	92	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	66	70	anti-parallel
Strand 3	H	53	57	anti-parallel
Strand 4	H	111	118	anti-parallel
Strand 5	H	124	127	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	66	70	anti-parallel
Strand 3	H	53	57	anti-parallel
Strand 4	H	111	118	anti-parallel
Strand 5	H	131	133	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	96	97	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	181	first strand
Strand 2	J	188	190	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BPE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPE