Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BPM entry

There are 2 chains in PDB entry 6BPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 50	PHE 760
A	THR 50	SER 654

There are 15 helices in PDB entry 6BPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	67	71	Right-handed 310
Helix 2	AA2	C	80	87	Right-handed alpha
Helix 3	AA3	C	90	96	Right-handed alpha
Helix 4	AA4	C	157	162	Right-handed alpha
Helix 5	AA5	C	278	286	Right-handed 310
Helix 6	AA6	C	345	349	Right-handed 310
Helix 7	AA7	C	355	358	Right-handed 310
Helix 8	AA8	A	67	71	Right-handed 310
Helix 9	AA9	A	80	87	Right-handed alpha
Helix 10	AB1	A	90	95	Right-handed alpha
Helix 11	AB2	A	96	98	Right-handed 310
Helix 12	AB3	A	157	162	Right-handed alpha
Helix 13	AB4	A	278	286	Right-handed 310
Helix 14	AB5	A	345	349	Right-handed 310
Helix 15	AB6	A	355	358	Right-handed 310

There are 10 sheets in PDB entry 6BPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	79	first strand
Strand 2	C	147	154	anti-parallel
Strand 3	C	168	174	anti-parallel
Strand 4	C	129	131	parallel
Strand 5	C	134	135	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	123	124	anti-parallel

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There are 24 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	419	first strand
Strand 2	C	360	387	anti-parallel
Strand 3	C	390	410	anti-parallel
Strand 4	C	434	455	anti-parallel
Strand 5	C	460	480	anti-parallel
Strand 6	C	500	522	anti-parallel
Strand 7	C	527	538	anti-parallel
Strand 8	C	564	577	anti-parallel
Strand 9	C	582	599	anti-parallel
Strand 10	C	605	625	anti-parallel
Strand 11	C	628	643	anti-parallel
Strand 12	C	661	669	anti-parallel
Strand 13	C	675	684	anti-parallel
Strand 14	C	704	714	anti-parallel
Strand 15	C	719	726	anti-parallel
Strand 16	C	751	760	anti-parallel
Strand 17	C	182	190	anti-parallel
Strand 18	C	194	204	anti-parallel
Strand 19	C	209	222	anti-parallel
Strand 20	C	225	241	anti-parallel
Strand 21	C	247	260	anti-parallel
Strand 22	C	302	319	anti-parallel
Strand 23	C	322	343	anti-parallel
Strand 24	C	360	387	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	743	746	anti-parallel
Strand 3	C	734	737	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	688	first strand
Strand 2	C	700	701	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	147	154	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	129	131	parallel
Strand 5	A	134	135	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	123	124	anti-parallel

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There are 24 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	360	386	anti-parallel
Strand 3	A	391	410	anti-parallel
Strand 4	A	434	455	anti-parallel
Strand 5	A	460	480	anti-parallel
Strand 6	A	500	522	anti-parallel
Strand 7	A	527	538	anti-parallel
Strand 8	A	564	577	anti-parallel
Strand 9	A	582	599	anti-parallel
Strand 10	A	605	625	anti-parallel
Strand 11	A	628	643	anti-parallel
Strand 12	A	661	669	anti-parallel
Strand 13	A	675	684	anti-parallel
Strand 14	A	704	714	anti-parallel
Strand 15	A	719	726	anti-parallel
Strand 16	A	751	760	anti-parallel
Strand 17	A	182	190	anti-parallel
Strand 18	A	194	204	anti-parallel
Strand 19	A	209	221	anti-parallel
Strand 20	A	229	241	anti-parallel
Strand 21	A	247	260	anti-parallel
Strand 22	A	302	319	anti-parallel
Strand 23	A	322	343	anti-parallel
Strand 24	A	360	386	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	743	746	anti-parallel
Strand 3	A	734	737	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	688	first strand
Strand 2	A	700	701	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPM