Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BPN entry

There is 1 chain in PDB entry 6BPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 50PHE 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6BPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 71Right-handed 310
Helix 2
AA2
A
80 86Right-handed alpha
Helix 3
AA3
A
90 95Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
157 162Right-handed alpha
Helix 6
AA6
A
278 286Right-handed 310
Helix 7
AA7
A
345 347Right-handed 310
Helix 8
AA8
A
355 358Right-handed 310
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There are 5 sheets in PDB entry 6BPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
147 154anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
129 131parallel
Strand 5
A
134 135anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
117 120anti-parallel
Strand 3
A
123 124anti-parallel
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There are 25 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
418 419first strand
Strand 3
A
322 343first strand
Strand 4
A
302 319anti-parallel
Strand 5
A
247 260anti-parallel
Strand 6
A
229 241anti-parallel
Strand 7
A
210 221anti-parallel
Strand 8
A
194 204anti-parallel
Strand 9
A
182 190anti-parallel
Strand 10
A
751 759anti-parallel
Strand 11
A
719 726anti-parallel
Strand 12
A
704 716anti-parallel
Strand 13
A
675 684anti-parallel
Strand 14
A
661 670anti-parallel
Strand 15
A
628 640anti-parallel
Strand 16
A
611 625anti-parallel
Strand 17
A
582 594anti-parallel
Strand 18
A
564 577anti-parallel
Strand 19
A
527 538anti-parallel
Strand 20
A
500 522anti-parallel
Strand 21
A
460 480anti-parallel
Strand 22
A
439 455anti-parallel
Strand 23
A
390 407anti-parallel
Strand 24
A
360 387anti-parallel
Strand 25
A
418 419anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
743 746anti-parallel
Strand 3
A
734 737anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 688first strand
Strand 2
A
700 701anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il