Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BPY entry

There are 2 chains in PDB entry 6BPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 326
B
 MET 1SER 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6BPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
133 138Right-handed alpha
Helix 5
AA5
A
145 150Right-handed alpha
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
293 296Right-handed 310
Helix 10
AB1
A
302 326Right-handed alpha
Helix 11
AB2
B
12 25Right-handed alpha
Helix 12
AB3
B
44 48Right-handed 310
Helix 13
AB4
B
63 78Right-handed alpha
Helix 14
AB5
B
133 138Right-handed alpha
Helix 15
AB6
B
145 150Right-handed alpha
Helix 16
AB7
B
152 156Right-handed 310
Helix 17
AB8
B
166 177Right-handed alpha
Helix 18
AB9
B
195 205Right-handed alpha
Helix 19
AC1
B
293 296Right-handed 310
Helix 20
AC2
B
302 323Right-handed alpha
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There are 10 sheets in PDB entry 6BPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
113 120parallel
Strand 5
A
97 101anti-parallel
Strand 6
A
87 91anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
113 120parallel
Strand 5
A
289 291parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
256 258anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
249 252parallel
Strand 3
A
159 163parallel
Strand 4
A
182 186parallel
Strand 5
A
208 211parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 221first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
242 246anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
30 32parallel
Strand 3
B
3 9parallel
Strand 4
B
113 120parallel
Strand 5
B
97 101anti-parallel
Strand 6
B
87 91anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
30 32parallel
Strand 3
B
3 9parallel
Strand 4
B
113 120parallel
Strand 5
B
289 291parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
256 258anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
249 252parallel
Strand 3
B
159 163parallel
Strand 4
B
182 186parallel
Strand 5
B
208 211parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 221first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
242 246anti-parallel
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