Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BPZ entry

There are 3 chains in PDB entry 6BPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1137	ARG 2544
B	PRO 1137	ARG 2544
C	PRO 1137	ARG 2544

There are126 helices in PDB entry 6BPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1150	1159	Right-handed alpha
Helix 2	AA2	A	1160	1173	Right-handed alpha
Helix 3	AA3	A	1178	1193	Right-handed alpha
Helix 4	AA4	A	1194	1199	Right-handed alpha
Helix 5	AA5	A	1202	1232	Right-handed alpha
Helix 6	AA6	A	1281	1298	Right-handed alpha
Helix 7	AA7	A	1299	1306	Right-handed alpha
Helix 8	AA8	A	1307	1315	Right-handed alpha
Helix 9	AA9	A	1315	1364	Right-handed alpha
Helix 10	AB1	A	1411	1415	Right-handed 310
Helix 11	AB2	A	1502	1511	Right-handed alpha
Helix 12	AB3	A	1513	1519	Right-handed alpha
Helix 13	AB4	A	1603	1619	Right-handed alpha
Helix 14	AB5	A	1619	1640	Right-handed alpha
Helix 15	AB6	A	1661	1667	Right-handed alpha
Helix 16	AB7	A	1672	1686	Right-handed alpha
Helix 17	AB8	A	1687	1703	Right-handed alpha
Helix 18	AB9	A	1708	1718	Right-handed alpha
Helix 19	AC1	A	1726	1747	Right-handed alpha
Helix 20	AC2	A	1783	1803	Right-handed alpha
Helix 21	AC3	A	1957	1960	Right-handed 310
Helix 22	AC4	A	1961	1967	Right-handed alpha
Helix 23	AC5	A	1976	1995	Right-handed alpha
Helix 24	AC6	A	2018	2040	Right-handed alpha
Helix 25	AC7	A	2043	2063	Right-handed alpha
Helix 26	AC8	A	2076	2100	Right-handed alpha
Helix 27	AC9	A	2115	2127	Right-handed alpha
Helix 28	AD1	A	2132	2142	Right-handed alpha
Helix 29	AD2	A	2148	2175	Right-handed alpha
Helix 30	AD3	A	2184	2211	Right-handed alpha
Helix 31	AD4	A	2252	2263	Right-handed alpha
Helix 32	AD5	A	2266	2274	Right-handed alpha
Helix 33	AD6	A	2275	2276	Right-handed 310
Helix 34	AD7	A	2277	2279	Right-handed 310
Helix 35	AD8	A	2297	2311	Right-handed alpha
Helix 36	AD9	A	2327	2330	Right-handed 310
Helix 37	AE1	A	2348	2357	Right-handed alpha
Helix 38	AE2	A	2358	2360	Right-handed 310
Helix 39	AE3	A	2467	2485	Right-handed alpha
Helix 40	AE4	A	2500	2516	Right-handed alpha
Helix 41	AE5	A	2521	2533	Right-handed alpha
Helix 42	AE6	A	2535	2543	Right-handed alpha
Helix 43	AE7	B	1150	1159	Right-handed alpha
Helix 44	AE8	B	1160	1173	Right-handed alpha
Helix 45	AE9	B	1178	1193	Right-handed alpha
Helix 46	AF1	B	1194	1199	Right-handed alpha
Helix 47	AF2	B	1202	1232	Right-handed alpha
Helix 48	AF3	B	1281	1298	Right-handed alpha
Helix 49	AF4	B	1299	1306	Right-handed alpha
Helix 50	AF5	B	1307	1315	Right-handed alpha
Helix 51	AF6	B	1315	1364	Right-handed alpha
Helix 52	AF7	B	1411	1415	Right-handed 310
Helix 53	AF8	B	1502	1511	Right-handed alpha
Helix 54	AF9	B	1513	1519	Right-handed alpha
Helix 55	AG1	B	1603	1619	Right-handed alpha
Helix 56	AG2	B	1619	1640	Right-handed alpha
Helix 57	AG3	B	1661	1667	Right-handed alpha
Helix 58	AG4	B	1672	1686	Right-handed alpha
Helix 59	AG5	B	1687	1703	Right-handed alpha
Helix 60	AG6	B	1708	1718	Right-handed alpha
Helix 61	AG7	B	1726	1747	Right-handed alpha
Helix 62	AG8	B	1783	1803	Right-handed alpha
Helix 63	AG9	B	1957	1960	Right-handed 310
Helix 64	AH1	B	1961	1967	Right-handed alpha
Helix 65	AH2	B	1976	1995	Right-handed alpha
Helix 66	AH3	B	2018	2040	Right-handed alpha
Helix 67	AH4	B	2043	2063	Right-handed alpha
Helix 68	AH5	B	2076	2100	Right-handed alpha
Helix 69	AH6	B	2115	2127	Right-handed alpha
Helix 70	AH7	B	2132	2142	Right-handed alpha
Helix 71	AH8	B	2148	2175	Right-handed alpha
Helix 72	AH9	B	2184	2211	Right-handed alpha
Helix 73	AI1	B	2252	2263	Right-handed alpha
Helix 74	AI2	B	2266	2274	Right-handed alpha
Helix 75	AI3	B	2275	2276	Right-handed 310
Helix 76	AI4	B	2277	2279	Right-handed 310
Helix 77	AI5	B	2297	2311	Right-handed alpha
Helix 78	AI6	B	2327	2330	Right-handed 310
Helix 79	AI7	B	2348	2357	Right-handed alpha
Helix 80	AI8	B	2358	2360	Right-handed 310
Helix 81	AI9	B	2467	2485	Right-handed alpha
Helix 82	AJ1	B	2500	2516	Right-handed alpha
Helix 83	AJ2	B	2521	2533	Right-handed alpha
Helix 84	AJ3	B	2535	2543	Right-handed alpha
Helix 85	AJ4	C	1150	1159	Right-handed alpha
Helix 86	AJ5	C	1160	1173	Right-handed alpha
Helix 87	AJ6	C	1178	1193	Right-handed alpha
Helix 88	AJ7	C	1194	1199	Right-handed alpha
Helix 89	AJ8	C	1202	1232	Right-handed alpha
Helix 90	AJ9	C	1281	1298	Right-handed alpha
Helix 91	AK1	C	1299	1306	Right-handed alpha
Helix 92	AK2	C	1307	1315	Right-handed alpha
Helix 93	AK3	C	1315	1364	Right-handed alpha
Helix 94	AK4	C	1411	1415	Right-handed 310
Helix 95	AK5	C	1502	1511	Right-handed alpha
Helix 96	AK6	C	1513	1519	Right-handed alpha
Helix 97	AK7	C	1603	1619	Right-handed alpha
Helix 98	AK8	C	1619	1640	Right-handed alpha
Helix 99	AK9	C	1661	1667	Right-handed alpha
Helix 100	AL1	C	1672	1686	Right-handed alpha
Helix 101	AL2	C	1687	1703	Right-handed alpha
Helix 102	AL3	C	1708	1718	Right-handed alpha
Helix 103	AL4	C	1726	1747	Right-handed alpha
Helix 104	AL5	C	1783	1803	Right-handed alpha
Helix 105	AL6	C	1957	1960	Right-handed 310
Helix 106	AL7	C	1961	1967	Right-handed alpha
Helix 107	AL8	C	1976	1995	Right-handed alpha
Helix 108	AL9	C	2018	2040	Right-handed alpha
Helix 109	AM1	C	2043	2063	Right-handed alpha
Helix 110	AM2	C	2076	2100	Right-handed alpha
Helix 111	AM3	C	2115	2127	Right-handed alpha
Helix 112	AM4	C	2132	2142	Right-handed alpha
Helix 113	AM5	C	2148	2175	Right-handed alpha
Helix 114	AM6	C	2184	2211	Right-handed alpha
Helix 115	AM7	C	2252	2263	Right-handed alpha
Helix 116	AM8	C	2266	2274	Right-handed alpha
Helix 117	AM9	C	2275	2276	Right-handed 310
Helix 118	AN1	C	2277	2279	Right-handed 310
Helix 119	AN2	C	2297	2311	Right-handed alpha
Helix 120	AN3	C	2327	2330	Right-handed 310
Helix 121	AN4	C	2348	2357	Right-handed alpha
Helix 122	AN5	C	2358	2360	Right-handed 310
Helix 123	AN6	C	2467	2485	Right-handed alpha
Helix 124	AN7	C	2500	2516	Right-handed alpha
Helix 125	AN8	C	2521	2533	Right-handed alpha
Helix 126	AN9	C	2535	2543	Right-handed alpha

There are 9 sheets in PDB entry 6BPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2239	2243	first strand
Strand 2	A	2223	2232	anti-parallel
Strand 3	A	2315	2325	anti-parallel
Strand 4	A	2335	2344	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2248	2250	first strand
Strand 2	A	2281	2287	anti-parallel
Strand 3	A	2443	2450	anti-parallel
Strand 4	A	2375	2378	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2366	2372	first strand
Strand 2	A	2399	2409	anti-parallel
Strand 3	A	2426	2434	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2239	2243	first strand
Strand 2	B	2223	2232	anti-parallel
Strand 3	B	2315	2325	anti-parallel
Strand 4	B	2335	2344	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2248	2250	first strand
Strand 2	B	2281	2287	anti-parallel
Strand 3	B	2443	2450	anti-parallel
Strand 4	B	2375	2378	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2366	2372	first strand
Strand 2	B	2399	2409	anti-parallel
Strand 3	B	2426	2434	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2239	2243	first strand
Strand 2	C	2223	2232	anti-parallel
Strand 3	C	2315	2325	anti-parallel
Strand 4	C	2335	2344	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2248	2250	first strand
Strand 2	C	2281	2287	anti-parallel
Strand 3	C	2443	2450	anti-parallel
Strand 4	C	2375	2378	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2366	2372	first strand
Strand 2	C	2399	2409	anti-parallel
Strand 3	C	2426	2434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BPZ