Analysis of interatomic Contacts of Structural Units in PDB entry:
6BQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BQC entry

There is 1 chain in PDB entry 6BQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 14ARG 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6BQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
45 64Right-handed alpha
Helix 3
AA3
A
71 82Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
123 131Right-handed alpha
Helix 7
AA7
A
147 164Right-handed alpha
Helix 8
AA8
A
179 189Right-handed alpha
Helix 9
AA9
A
199 210Right-handed alpha
Helix 10
AB1
A
221 225Right-handed 310
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
242 244Right-handed 310
Helix 13
AB4
A
245 256Right-handed alpha
Helix 14
AB5
A
278 285Right-handed alpha
Helix 15
AB6
A
293 302Right-handed alpha
Helix 16
AB7
A
313 336Right-handed alpha
Helix 17
AB8
A
337 339Right-handed 310
Helix 18
AB9
A
340 360Right-handed alpha
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There are 2 sheets in PDB entry 6BQC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
67 69anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
192 197parallel
Strand 3
A
170 174parallel
Strand 4
A
229 235parallel
Strand 5
A
257 270parallel
Strand 6
A
363 371anti-parallel
Strand 7
A
306 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il