Analysis of interatomic Contacts of Structural Units in PDB entry:
6BQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BQM entry

There is 1 chain in PDB entry 6BQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35ASP 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6BQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 78Right-handed alpha
Helix 2
AA2
A
81 83Right-handed 310
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
142 148Right-handed alpha
Helix 5
AA5
A
186 191Right-handed alpha
Helix 6
AA6
A
196 205Right-handed alpha
Helix 7
AA7
A
261 263Right-handed 310
Helix 8
AA8
A
264 272Right-handed alpha
Helix 9
AA9
A
383 390Right-handed alpha
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There are 7 sheets in PDB entry 6BQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
178 185anti-parallel
Strand 3
A
210 213anti-parallel
Strand 4
A
256 259anti-parallel
Strand 5
A
237 245anti-parallel
Strand 6
A
228 232anti-parallel
Strand 7
A
154 159anti-parallel
Strand 8
A
178 185anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
58 66anti-parallel
Strand 3
A
69 72anti-parallel
Strand 4
A
124 128anti-parallel
Strand 5
A
101 110anti-parallel
Strand 6
A
85 89anti-parallel
Strand 7
A
47 52anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
289 299anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
322 328anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 286first strand
Strand 2
A
369 378parallel
Strand 3
A
353 361anti-parallel
Strand 4
A
310 314anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
332 334anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
421 430anti-parallel
Strand 4
A
479 487anti-parallel
Strand 5
A
449 454anti-parallel
Strand 6
A
457 462anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
411 413anti-parallel
Strand 3
A
497 506anti-parallel
Strand 4
A
433 442anti-parallel
Strand 5
A
467 474anti-parallel
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