Analysis of interatomic Contacts of Structural Units in PDB entry:
6BQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BQN entry

There are 7 chains in PDB entry 6BQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK 78	UNK 572
B	UNK 48	UNK 542
C	UNK 49	UNK 551
D	UNK 1	UNK 128
E	UNK 1	UNK 122
F	UNK 1	UNK 116
G	UNK 1	UNK 112

There are 41 helices in PDB entry 6BQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	85	Right-handed alpha
Helix 2	AA2	A	95	106	Right-handed alpha
Helix 3	AA3	A	143	161	Right-handed alpha
Helix 4	AA4	A	243	260	Right-handed alpha
Helix 5	AA5	A	261	263	Right-handed 310
Helix 6	AA6	A	273	277	Right-handed 310
Helix 7	AA7	A	413	429	Right-handed alpha
Helix 8	AA8	A	452	465	Right-handed alpha
Helix 9	AA9	A	470	475	Right-handed alpha
Helix 10	AB1	A	497	511	Right-handed alpha
Helix 11	AB2	A	548	559	Right-handed alpha
Helix 12	AB3	A	560	569	Right-handed alpha
Helix 13	AB4	B	49	75	Right-handed alpha
Helix 14	AB5	B	104	108	Right-handed 310
Helix 15	AB6	B	112	128	Right-handed alpha
Helix 16	AB7	B	141	146	Right-handed alpha
Helix 17	AB8	B	213	230	Right-handed alpha
Helix 18	AB9	B	231	238	Right-handed alpha
Helix 19	AC1	B	241	245	Right-handed alpha
Helix 20	AC2	B	302	306	Right-handed 310
Helix 21	AC3	B	354	359	Right-handed alpha
Helix 22	AC4	B	383	399	Right-handed alpha
Helix 23	AC5	B	422	432	Right-handed alpha
Helix 24	AC6	B	433	444	Right-handed alpha
Helix 25	AC7	B	470	476	Right-handed alpha
Helix 26	AC8	B	519	541	Right-handed alpha
Helix 27	AC9	C	51	79	Right-handed alpha
Helix 28	AD1	C	114	129	Right-handed alpha
Helix 29	AD2	C	221	238	Right-handed alpha
Helix 30	AD3	C	242	250	Right-handed alpha
Helix 31	AD4	C	301	304	Right-handed 310
Helix 32	AD5	C	390	407	Right-handed alpha
Helix 33	AD6	C	430	444	Right-handed alpha
Helix 34	AD7	C	448	453	Right-handed alpha
Helix 35	AD8	C	479	488	Right-handed alpha
Helix 36	AD9	C	497	501	Right-handed 310
Helix 37	AE1	C	528	541	Right-handed alpha
Helix 38	AE2	C	541	551	Right-handed alpha
Helix 39	AE3	E	53	56	Right-handed 310
Helix 40	AE4	E	87	91	Right-handed 310
Helix 41	AE5	G	84	88	Right-handed 310

There are 26 sheets in PDB entry 6BQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	120	first strand
Strand 2	A	534	540	anti-parallel
Strand 3	A	373	385	parallel
Strand 4	A	480	487	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	328	333	anti-parallel
Strand 3	A	521	528	anti-parallel
Strand 4	A	373	385	parallel
Strand 5	A	490	492	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	305	307	anti-parallel
Strand 3	A	130	133	anti-parallel
Strand 4	A	349	353	anti-parallel
Strand 5	A	367	369	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	477	478	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	492	511	anti-parallel
Strand 3	B	340	352	parallel
Strand 4	B	449	452	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	250	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	492	511	anti-parallel
Strand 4	B	340	352	parallel
Strand 5	B	455	461	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	285	286	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	266	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	316	321	anti-parallel
Strand 5	B	334	336	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	189	193	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	88	first strand
Strand 2	C	503	520	anti-parallel
Strand 3	C	352	362	parallel
Strand 4	C	459	462	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	259	262	anti-parallel
Strand 3	C	306	309	anti-parallel
Strand 4	C	503	520	anti-parallel
Strand 5	C	352	362	parallel
Strand 6	C	465	469	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	296	297	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	281	286	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	328	332	anti-parallel
Strand 5	C	345	346	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	202	206	anti-parallel
Strand 3	C	215	219	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	37	45	anti-parallel
Strand 3	D	90	98	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	123	126	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	66	69	anti-parallel
Strand 3	D	54	56	anti-parallel
Strand 4	D	107	110	anti-parallel
Strand 5	D	117	118	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	21	24	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	119	120	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	47	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	109	112	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	22	25	anti-parallel
Strand 3	F	78	80	anti-parallel
Strand 4	F	71	73	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	114	115	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	60	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	33	37	anti-parallel
Strand 4	F	95	99	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	23	25	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	90	95	anti-parallel
Strand 4	G	107	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BQN