Analysis of interatomic Contacts of Structural Units in PDB entry:
6BRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BRJ entry

There is 1 chain in PDB entry 6BRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 568VAL 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6BRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
569 573Right-handed 310
Helix 2
AA2
A
625 640Right-handed alpha
Helix 3
AA3
A
671 678Right-handed alpha
Helix 4
AA4
A
702 723Right-handed alpha
Helix 5
AA5
A
731 733Right-handed 310
Helix 6
AA6
A
739 741Right-handed 310
Helix 7
AA7
A
752 759Right-handed 310
Helix 8
AA8
A
769 773Right-handed 310
Helix 9
AA9
A
774 781Right-handed alpha
Helix 10
AB1
A
784 801Right-handed alpha
Helix 11
AB2
A
812 826Right-handed alpha
Helix 12
AB3
A
840 851Right-handed alpha
Helix 13
AB4
A
854 858Right-handed 310
Helix 14
AB5
A
860 870Right-handed alpha
Helix 15
AB6
A
871 875Right-handed 310
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There are 3 sheets in PDB entry 6BRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 581first strand
Strand 2
A
585 591anti-parallel
Strand 3
A
615 620anti-parallel
Strand 4
A
661 665anti-parallel
Strand 5
A
650 654anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 681first strand
Strand 2
A
700 701parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 737first strand
Strand 2
A
743 745anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il