Analysis of interatomic Contacts of Structural Units in PDB entry:
6BRM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BRM entry

There are 8 chains in PDB entry 6BRM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 262
B	MET 1	SER 263
C	MET 1	TRP 262
D	MET 1	ALA 261
E	MET 1	ALA 261
F	MET 1	TRP 262
G	MET 1	ALA 261
H	MET 1	ALA 261

There are 68 helices in PDB entry 6BRM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	59	Right-handed alpha
Helix 2	AA2	A	74	81	Right-handed alpha
Helix 3	AA3	A	91	101	Right-handed alpha
Helix 4	AA4	A	132	135	Right-handed 310
Helix 5	AA5	A	136	144	Right-handed alpha
Helix 6	AA6	A	168	179	Right-handed alpha
Helix 7	AA7	A	202	212	Right-handed alpha
Helix 8	AA8	A	231	242	Right-handed alpha
Helix 9	AA9	B	53	59	Right-handed alpha
Helix 10	AB1	B	69	73	Right-handed 310
Helix 11	AB2	B	74	81	Right-handed alpha
Helix 12	AB3	B	91	101	Right-handed alpha
Helix 13	AB4	B	132	135	Right-handed 310
Helix 14	AB5	B	136	144	Right-handed alpha
Helix 15	AB6	B	168	179	Right-handed alpha
Helix 16	AB7	B	202	212	Right-handed alpha
Helix 17	AB8	B	231	242	Right-handed alpha
Helix 18	AB9	C	53	58	Right-handed alpha
Helix 19	AC1	C	69	73	Right-handed 310
Helix 20	AC2	C	74	81	Right-handed alpha
Helix 21	AC3	C	91	101	Right-handed alpha
Helix 22	AC4	C	132	135	Right-handed 310
Helix 23	AC5	C	136	144	Right-handed alpha
Helix 24	AC6	C	168	179	Right-handed alpha
Helix 25	AC7	C	201	212	Right-handed alpha
Helix 26	AC8	C	231	242	Right-handed alpha
Helix 27	AC9	D	53	58	Right-handed alpha
Helix 28	AD1	D	69	73	Right-handed 310
Helix 29	AD2	D	74	81	Right-handed alpha
Helix 30	AD3	D	91	100	Right-handed alpha
Helix 31	AD4	D	132	135	Right-handed 310
Helix 32	AD5	D	136	144	Right-handed alpha
Helix 33	AD6	D	168	179	Right-handed alpha
Helix 34	AD7	D	201	212	Right-handed alpha
Helix 35	AD8	D	231	243	Right-handed alpha
Helix 36	AD9	E	53	59	Right-handed alpha
Helix 37	AE1	E	74	81	Right-handed alpha
Helix 38	AE2	E	91	101	Right-handed alpha
Helix 39	AE3	E	132	135	Right-handed 310
Helix 40	AE4	E	136	144	Right-handed alpha
Helix 41	AE5	E	168	179	Right-handed alpha
Helix 42	AE6	E	201	212	Right-handed alpha
Helix 43	AE7	E	231	243	Right-handed alpha
Helix 44	AE8	F	53	59	Right-handed alpha
Helix 45	AE9	F	69	73	Right-handed 310
Helix 46	AF1	F	74	81	Right-handed alpha
Helix 47	AF2	F	91	100	Right-handed alpha
Helix 48	AF3	F	132	135	Right-handed 310
Helix 49	AF4	F	136	144	Right-handed alpha
Helix 50	AF5	F	168	179	Right-handed alpha
Helix 51	AF6	F	201	212	Right-handed alpha
Helix 52	AF7	F	231	242	Right-handed alpha
Helix 53	AF8	G	53	58	Right-handed alpha
Helix 54	AF9	G	74	81	Right-handed alpha
Helix 55	AG1	G	91	101	Right-handed alpha
Helix 56	AG2	G	132	136	Right-handed 310
Helix 57	AG3	G	137	144	Right-handed alpha
Helix 58	AG4	G	168	179	Right-handed alpha
Helix 59	AG5	G	201	212	Right-handed alpha
Helix 60	AG6	G	231	243	Right-handed alpha
Helix 61	AG7	H	53	58	Right-handed alpha
Helix 62	AG8	H	74	81	Right-handed alpha
Helix 63	AG9	H	91	101	Right-handed alpha
Helix 64	AH1	H	132	135	Right-handed 310
Helix 65	AH2	H	136	144	Right-handed alpha
Helix 66	AH3	H	168	179	Right-handed alpha
Helix 67	AH4	H	202	212	Right-handed alpha
Helix 68	AH5	H	231	242	Right-handed alpha

There are 24 sheets in PDB entry 6BRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	87	89	parallel
Strand 3	A	62	65	parallel
Strand 4	A	18	22	parallel
Strand 5	A	10	15	anti-parallel
Strand 6	A	2	7	anti-parallel
Strand 7	A	256	258	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	120	124	anti-parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	182	186	parallel
Strand 6	A	216	220	parallel
Strand 7	A	248	249	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	196	197	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	87	89	parallel
Strand 3	B	62	64	parallel
Strand 4	B	18	22	parallel
Strand 5	B	10	15	anti-parallel
Strand 6	B	2	7	anti-parallel
Strand 7	B	256	258	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	148	152	anti-parallel
Strand 4	B	159	163	anti-parallel
Strand 5	B	182	186	parallel
Strand 6	B	216	220	parallel
Strand 7	B	248	249	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	196	197	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	87	89	parallel
Strand 3	C	62	65	parallel
Strand 4	C	18	22	parallel
Strand 5	C	10	15	anti-parallel
Strand 6	C	2	7	anti-parallel
Strand 7	C	256	258	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	120	124	anti-parallel
Strand 3	C	148	152	anti-parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	182	186	parallel
Strand 6	C	216	220	parallel
Strand 7	C	248	249	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	196	197	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	87	89	parallel
Strand 3	D	62	64	parallel
Strand 4	D	19	22	parallel
Strand 5	D	10	14	anti-parallel
Strand 6	D	2	7	anti-parallel
Strand 7	D	256	258	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	120	124	anti-parallel
Strand 3	D	148	152	anti-parallel
Strand 4	D	159	161	anti-parallel
Strand 5	D	182	186	parallel
Strand 6	D	216	220	parallel
Strand 7	D	248	249	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	196	197	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	108	first strand
Strand 2	E	87	89	parallel
Strand 3	E	62	65	parallel
Strand 4	E	19	22	parallel
Strand 5	E	10	14	anti-parallel
Strand 6	E	2	7	anti-parallel
Strand 7	E	256	258	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	120	124	anti-parallel
Strand 3	E	148	152	anti-parallel
Strand 4	E	159	161	anti-parallel
Strand 5	E	182	186	parallel
Strand 6	E	216	220	parallel
Strand 7	E	248	249	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	192	first strand
Strand 2	E	196	197	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	F	87	89	parallel
Strand 3	F	62	64	parallel
Strand 4	F	18	22	parallel
Strand 5	F	10	15	anti-parallel
Strand 6	F	2	7	anti-parallel
Strand 7	F	256	257	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	114	first strand
Strand 2	F	120	124	anti-parallel
Strand 3	F	148	153	anti-parallel
Strand 4	F	156	163	anti-parallel
Strand 5	F	182	186	parallel
Strand 6	F	216	220	parallel
Strand 7	F	248	249	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	192	first strand
Strand 2	F	196	197	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	108	first strand
Strand 2	G	87	89	parallel
Strand 3	G	62	65	parallel
Strand 4	G	18	22	parallel
Strand 5	G	10	15	anti-parallel
Strand 6	G	2	7	anti-parallel
Strand 7	G	255	258	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	114	first strand
Strand 2	G	120	124	anti-parallel
Strand 3	G	148	152	anti-parallel
Strand 4	G	159	161	anti-parallel
Strand 5	G	182	186	parallel
Strand 6	G	216	220	parallel
Strand 7	G	248	249	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	192	first strand
Strand 2	G	196	197	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	7	first strand
Strand 2	H	10	14	anti-parallel
Strand 3	H	19	22	anti-parallel
Strand 4	H	62	65	parallel
Strand 5	H	86	89	parallel
Strand 6	H	106	108	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	114	first strand
Strand 2	H	120	124	anti-parallel
Strand 3	H	148	152	anti-parallel
Strand 4	H	159	163	anti-parallel
Strand 5	H	182	186	parallel
Strand 6	H	216	220	parallel
Strand 7	H	248	249	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	192	first strand
Strand 2	H	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BRM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BRM