Analysis of interatomic Contacts of Structural Units in PDB entry:
6BRT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BRT entry

There are 5 chains in PDB entry 6BRT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP -16	TYR 268
B	ASP -16	TYR 268
C	ALA 4	TYR 268
D	ALA 4	TYR 268
E	GLY 3	VAL 202

There are116 helices in PDB entry 6BRT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-16	-3	Right-handed alpha
Helix 2	AA2	A	2	10	Right-handed alpha
Helix 3	AA3	A	31	36	Right-handed 310
Helix 4	AA4	A	38	42	Right-handed 310
Helix 5	AA5	A	60	64	Right-handed 310
Helix 6	AA6	A	71	87	Right-handed alpha
Helix 7	AA7	A	97	110	Right-handed alpha
Helix 8	AA8	A	137	151	Right-handed alpha
Helix 9	AA9	A	151	165	Right-handed alpha
Helix 10	AB1	A	168	182	Right-handed alpha
Helix 11	AB2	A	183	197	Right-handed alpha
Helix 12	AB3	A	199	206	Right-handed 310
Helix 13	AB4	A	222	233	Right-handed alpha
Helix 14	AB5	A	248	253	Right-handed alpha
Helix 15	AB6	A	253	265	Right-handed alpha
Helix 16	AB7	B	-13	-4	Right-handed alpha
Helix 17	AB8	B	1	10	Right-handed alpha
Helix 18	AB9	B	31	36	Right-handed 310
Helix 19	AC1	B	38	42	Right-handed 310
Helix 20	AC2	B	60	64	Right-handed 310
Helix 21	AC3	B	71	86	Right-handed alpha
Helix 22	AC4	B	97	110	Right-handed alpha
Helix 23	AC5	B	137	151	Right-handed alpha
Helix 24	AC6	B	151	165	Right-handed alpha
Helix 25	AC7	B	168	182	Right-handed alpha
Helix 26	AC8	B	183	197	Right-handed alpha
Helix 27	AC9	B	199	206	Right-handed 310
Helix 28	AD1	B	222	233	Right-handed alpha
Helix 29	AD2	B	248	253	Right-handed alpha
Helix 30	AD3	B	253	265	Right-handed alpha
Helix 31	AD4	C	5	10	Right-handed alpha
Helix 32	AD5	C	31	36	Right-handed 310
Helix 33	AD6	C	38	42	Right-handed 310
Helix 34	AD7	C	60	64	Right-handed 310
Helix 35	AD8	C	67	71	Right-handed 310
Helix 36	AD9	C	72	86	Right-handed alpha
Helix 37	AE1	C	97	110	Right-handed alpha
Helix 38	AE2	C	137	151	Right-handed alpha
Helix 39	AE3	C	152	165	Right-handed alpha
Helix 40	AE4	C	168	181	Right-handed alpha
Helix 41	AE5	C	183	197	Right-handed alpha
Helix 42	AE6	C	199	206	Right-handed 310
Helix 43	AE7	C	222	233	Right-handed alpha
Helix 44	AE8	C	248	253	Right-handed alpha
Helix 45	AE9	C	253	265	Right-handed alpha
Helix 46	AF1	D	5	10	Right-handed alpha
Helix 47	AF2	D	31	36	Right-handed 310
Helix 48	AF3	D	38	42	Right-handed 310
Helix 49	AF4	D	60	64	Right-handed 310
Helix 50	AF5	D	72	86	Right-handed alpha
Helix 51	AF6	D	97	110	Right-handed alpha
Helix 52	AF7	D	137	151	Right-handed alpha
Helix 53	AF8	D	151	165	Right-handed alpha
Helix 54	AF9	D	168	181	Right-handed alpha
Helix 55	AG1	D	183	197	Right-handed alpha
Helix 56	AG2	D	199	206	Right-handed 310
Helix 57	AG3	D	222	233	Right-handed alpha
Helix 58	AG4	D	248	253	Right-handed alpha
Helix 59	AG5	D	253	265	Right-handed alpha
Helix 60	AG6	E	4	10	Right-handed alpha
Helix 61	AG7	E	31	36	Right-handed 310
Helix 62	AG8	E	38	42	Right-handed 310
Helix 63	AG9	E	60	64	Right-handed 310
Helix 64	AH1	E	67	71	Right-handed 310
Helix 65	AH2	E	72	87	Right-handed alpha
Helix 66	AH3	E	97	110	Right-handed alpha
Helix 67	AH4	E	137	151	Right-handed alpha
Helix 68	AH5	E	151	165	Right-handed alpha
Helix 69	AH6	E	168	182	Right-handed alpha
Helix 70	AH7	E	183	196	Right-handed alpha
Helix 71	AH8	E	202	206	Right-handed 310
Helix 72	AH9	E	222	233	Right-handed alpha
Helix 73	AI1	E	248	253	Right-handed alpha
Helix 74	AI2	E	253	265	Right-handed alpha
Helix 75	AI3	F	5	10	Right-handed alpha
Helix 76	AI4	F	31	36	Right-handed 310
Helix 77	AI5	F	38	42	Right-handed 310
Helix 78	AI6	F	67	71	Right-handed 310
Helix 79	AI7	F	72	86	Right-handed alpha
Helix 80	AI8	F	97	110	Right-handed alpha
Helix 81	AI9	F	137	151	Right-handed alpha
Helix 82	AJ1	F	151	165	Right-handed alpha
Helix 83	AJ2	F	168	181	Right-handed alpha
Helix 84	AJ3	F	183	197	Right-handed alpha
Helix 85	AJ4	F	199	206	Right-handed 310
Helix 86	AJ5	F	222	233	Right-handed alpha
Helix 87	AJ6	F	248	253	Right-handed alpha
Helix 88	AJ7	F	253	265	Right-handed alpha
Helix 89	AJ8	G	5	10	Right-handed alpha
Helix 90	AJ9	G	31	36	Right-handed 310
Helix 91	AK1	G	38	42	Right-handed 310
Helix 92	AK2	G	60	64	Right-handed 310
Helix 93	AK3	G	72	86	Right-handed alpha
Helix 94	AK4	G	97	110	Right-handed alpha
Helix 95	AK5	G	137	151	Right-handed alpha
Helix 96	AK6	G	151	165	Right-handed alpha
Helix 97	AK7	G	168	181	Right-handed alpha
Helix 98	AK8	G	183	196	Right-handed alpha
Helix 99	AK9	G	199	206	Right-handed 310
Helix 100	AL1	G	222	233	Right-handed alpha
Helix 101	AL2	G	248	253	Right-handed alpha
Helix 102	AL3	G	253	265	Right-handed alpha
Helix 103	AL4	H	5	10	Right-handed alpha
Helix 104	AL5	H	31	36	Right-handed 310
Helix 105	AL6	H	39	44	Right-handed alpha
Helix 106	AL7	H	60	64	Right-handed 310
Helix 107	AL8	H	72	86	Right-handed alpha
Helix 108	AL9	H	97	110	Right-handed alpha
Helix 109	AM1	H	137	151	Right-handed alpha
Helix 110	AM2	H	151	165	Right-handed alpha
Helix 111	AM3	H	168	182	Right-handed alpha
Helix 112	AM4	H	183	197	Right-handed alpha
Helix 113	AM5	H	199	206	Right-handed 310
Helix 114	AM6	H	222	233	Right-handed alpha
Helix 115	AM7	H	248	253	Right-handed alpha
Helix 116	AM8	H	253	265	Right-handed alpha

There are 8 sheets in PDB entry 6BRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	21	25	parallel
Strand 4	A	91	96	parallel
Strand 5	A	114	120	parallel
Strand 6	A	210	214	parallel
Strand 7	A	237	241	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	21	25	parallel
Strand 4	B	91	96	parallel
Strand 5	B	114	120	parallel
Strand 6	B	210	215	parallel
Strand 7	B	237	242	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	21	25	parallel
Strand 4	C	91	96	parallel
Strand 5	C	114	120	parallel
Strand 6	C	210	216	parallel
Strand 7	C	237	245	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	47	50	anti-parallel
Strand 3	D	21	25	parallel
Strand 4	D	91	96	parallel
Strand 5	D	114	120	parallel
Strand 6	D	210	214	parallel
Strand 7	D	237	241	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	47	50	anti-parallel
Strand 3	E	21	25	parallel
Strand 4	E	91	96	parallel
Strand 5	E	114	120	parallel
Strand 6	E	210	214	parallel
Strand 7	E	237	241	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	47	50	anti-parallel
Strand 3	F	21	25	parallel
Strand 4	F	91	96	parallel
Strand 5	F	114	120	parallel
Strand 6	F	210	214	parallel
Strand 7	F	237	241	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	47	50	anti-parallel
Strand 3	G	21	25	parallel
Strand 4	G	91	96	parallel
Strand 5	G	114	120	parallel
Strand 6	G	210	214	parallel
Strand 7	G	237	241	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	47	50	anti-parallel
Strand 3	H	21	25	parallel
Strand 4	H	91	96	parallel
Strand 5	H	114	120	parallel
Strand 6	H	210	214	parallel
Strand 7	H	237	241	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BRT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BRT