Analysis of interatomic Contacts of Structural Units in PDB entry:
6BU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BU9 entry

There are 3 chains in PDB entry 6BU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 550
B
 G 1 U 24
C
 A 1 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6BU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
33 47Right-handed alpha
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
140 144Right-handed 310
Helix 5
AA5
A
183 197Right-handed alpha
Helix 6
AA6
A
209 216Right-handed alpha
Helix 7
AA7
A
234 247Right-handed alpha
Helix 8
AA8
A
294 317Right-handed alpha
Helix 9
AA9
A
320 337Right-handed alpha
Helix 10
AB1
A
339 357Right-handed alpha
Helix 11
AB2
A
394 408Right-handed alpha
Helix 12
AB3
A
442 449Right-handed alpha
Helix 13
AB4
A
462 466Right-handed 310
Helix 14
AB5
A
486 493Right-handed alpha
Helix 15
AB6
A
512 519Right-handed alpha
Helix 16
AB7
A
521 534Right-handed alpha
Helix 17
AB8
A
536 547Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6BU9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
167 172parallel
Strand 3
A
135 138parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
389 391parallel
Strand 3
A
476 478parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il