Analysis of interatomic Contacts of Structural Units in PDB entry:
6BV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BV8 entry

There is 1 chain in PDB entry 6BV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 95LYS 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6BV8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
95 111Right-handed alpha
Helix 2
AA2
A
112 127Right-handed alpha
Helix 3
AA3
A
131 143Right-handed alpha
Helix 4
AA4
A
154 171Right-handed alpha
Helix 5
AA5
A
175 190Right-handed alpha
Helix 6
AA6
A
191 205Right-handed alpha
Helix 7
AA7
A
210 224Right-handed alpha
Helix 8
AA8
A
226 240Right-handed alpha
Helix 9
AA9
A
245 259Right-handed alpha
Helix 10
AB1
A
261 276Right-handed alpha
Helix 11
AB2
A
280 293Right-handed alpha
Helix 12
AB3
A
293 298Right-handed alpha
Helix 13
AB4
A
305 317Right-handed alpha
Helix 14
AB5
A
357 376Right-handed alpha
Helix 15
AB6
A
377 390Right-handed alpha
Helix 16
AB7
A
400 406Right-handed alpha
Helix 17
AB8
A
412 427Right-handed alpha
Helix 18
AB9
A
449 462Right-handed alpha
Helix 19
AC1
A
474 486Right-handed alpha
Helix 20
AC2
A
497 504Right-handed 310
Helix 21
AC3
A
506 515Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6BV8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 336first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
547 550anti-parallel
Strand 4
A
540 541anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
465 468first strand
Strand 2
A
434 438parallel
Strand 3
A
396 399parallel
Strand 4
A
488 490parallel
Strand 5
A
516 522parallel
Strand 6
A
526 530anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il