Analysis of interatomic Contacts of Structural Units in PDB entry:
6BVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BVA entry

There are 6 chains in PDB entry 6BVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 0GLU 161
E
 VAL 1064THR 1103
B
 GLY 0PHE 73
A
 GLY -2ARG 76
C
 MET 1GLU 161
F
 VAL 1064THR 1103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6BVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
18 22Right-handed alpha
Helix 2
AA2
D
24 30Right-handed alpha
Helix 3
AA3
D
51 65Right-handed alpha
Helix 4
AA4
D
86 93Right-handed alpha
Helix 5
AA5
D
96 111Right-handed alpha
Helix 6
AA6
D
112 126Right-handed alpha
Helix 7
AA7
D
131 139Right-handed alpha
Helix 8
AA8
D
148 157Right-handed alpha
Helix 9
AA9
E
1066 1075Right-handed alpha
Helix 10
AB1
E
1078 1086Right-handed alpha
Helix 11
AB2
E
1089 1096Right-handed alpha
Helix 12
AB3
B
22 35Right-handed alpha
Helix 13
AB4
B
37 39Right-handed 310
Helix 14
AB5
B
56 60Right-handed 310
Helix 15
AB6
A
22 35Right-handed alpha
Helix 16
AB7
A
37 39Right-handed 310
Helix 17
AB8
A
56 60Right-handed 310
Helix 18
AB9
C
18 22Right-handed alpha
Helix 19
AC1
C
24 32Right-handed alpha
Helix 20
AC2
C
51 65Right-handed alpha
Helix 21
AC3
C
86 93Right-handed alpha
Helix 22
AC4
C
96 111Right-handed alpha
Helix 23
AC5
C
112 126Right-handed alpha
Helix 24
AC6
C
131 140Right-handed alpha
Helix 25
AC7
C
146 157Right-handed alpha
Helix 26
AC8
F
1066 1075Right-handed alpha
Helix 27
AC9
F
1078 1086Right-handed alpha
Helix 28
AD1
F
1089 1096Right-handed alpha
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There are 4 sheets in PDB entry 6BVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
D
3 7anti-parallel
Strand 3
D
45 46parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
1 7anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
3 7anti-parallel
Strand 3
C
45 46parallel
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