Analysis of interatomic Contacts of Structural Units in PDB entry:
6BVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BVD entry

There are 2 chains in PDB entry 6BVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 429
B	MET 1	SER 429

There are 28 helices in PDB entry 6BVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed 310
Helix 2	AA2	A	62	69	Right-handed alpha
Helix 3	AA3	A	80	99	Right-handed alpha
Helix 4	AA4	A	101	114	Right-handed alpha
Helix 5	AA5	A	181	185	Right-handed 310
Helix 6	AA6	A	219	236	Right-handed alpha
Helix 7	AA7	A	262	269	Right-handed alpha
Helix 8	AA8	A	270	276	Right-handed 310
Helix 9	AA9	A	277	300	Right-handed alpha
Helix 10	AB1	A	310	322	Right-handed alpha
Helix 11	AB2	A	335	347	Right-handed alpha
Helix 12	AB3	A	350	359	Right-handed alpha
Helix 13	AB4	A	393	402	Right-handed 310
Helix 14	AB5	A	408	418	Right-handed alpha
Helix 15	AB6	B	55	60	Right-handed 310
Helix 16	AB7	B	62	67	Right-handed alpha
Helix 17	AB8	B	80	99	Right-handed alpha
Helix 18	AB9	B	101	114	Right-handed alpha
Helix 19	AC1	B	181	185	Right-handed 310
Helix 20	AC2	B	219	236	Right-handed alpha
Helix 21	AC3	B	262	269	Right-handed alpha
Helix 22	AC4	B	270	276	Right-handed 310
Helix 23	AC5	B	277	300	Right-handed alpha
Helix 24	AC6	B	310	323	Right-handed alpha
Helix 25	AC7	B	335	349	Right-handed alpha
Helix 26	AC8	B	350	358	Right-handed alpha
Helix 27	AC9	B	393	402	Right-handed 310
Helix 28	AD1	B	408	419	Right-handed alpha

There are 10 sheets in PDB entry 6BVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	43	46	anti-parallel
Strand 6	A	153	156	parallel
Strand 7	A	191	194	parallel
Strand 8	A	166	169	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	304	305	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	199	206	anti-parallel
Strand 4	A	371	375	anti-parallel
Strand 5	A	426	427	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	260	261	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	332	333	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	19	22	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	43	49	anti-parallel
Strand 6	B	153	157	parallel
Strand 7	B	191	194	parallel
Strand 8	B	166	168	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	304	305	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	214	217	anti-parallel
Strand 3	B	199	205	anti-parallel
Strand 4	B	371	375	anti-parallel
Strand 5	B	426	427	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	245	first strand
Strand 2	B	260	261	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	332	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BVD