Analysis of interatomic Contacts of Structural Units in PDB entry:
6BY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BY0 entry

There are 2 chains in PDB entry 6BY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 28	ALA 753
B	LEU 29	GLN 556

There are124 helices in PDB entry 6BY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	57	Right-handed alpha
Helix 2	AA2	A	62	68	Right-handed alpha
Helix 3	AA3	A	107	119	Right-handed alpha
Helix 4	AA4	A	150	154	Right-handed 310
Helix 5	AA5	A	210	212	Right-handed 310
Helix 6	AA6	A	213	222	Right-handed alpha
Helix 7	AA7	A	236	246	Right-handed alpha
Helix 8	AA8	A	249	258	Right-handed alpha
Helix 9	AA9	A	259	262	Right-handed 310
Helix 10	AB1	A	265	269	Right-handed 310
Helix 11	AB2	A	303	314	Right-handed alpha
Helix 12	AB3	A	316	329	Right-handed alpha
Helix 13	AB4	A	344	346	Right-handed 310
Helix 14	AB5	A	381	386	Right-handed alpha
Helix 15	AB6	A	405	423	Right-handed alpha
Helix 16	AB7	A	427	435	Right-handed 310
Helix 17	AB8	A	498	502	Right-handed 310
Helix 18	AB9	A	505	515	Right-handed alpha
Helix 19	AC1	A	516	533	Right-handed alpha
Helix 20	AC2	A	536	549	Right-handed alpha
Helix 21	AC3	A	551	562	Right-handed alpha
Helix 22	AC4	A	567	572	Right-handed alpha
Helix 23	AC5	A	585	589	Right-handed 310
Helix 24	AC6	A	612	626	Right-handed alpha
Helix 25	AC7	A	658	662	Right-handed 310
Helix 26	AC8	A	671	675	Right-handed 310
Helix 27	AC9	A	678	691	Right-handed alpha
Helix 28	AD1	A	700	707	Right-handed 310
Helix 29	AD2	A	725	738	Right-handed alpha
Helix 30	AD3	A	741	743	Right-handed 310
Helix 31	AD4	A	744	749	Right-handed alpha
Helix 32	AD5	B	52	57	Right-handed alpha
Helix 33	AD6	B	62	68	Right-handed alpha
Helix 34	AD7	B	107	119	Right-handed alpha
Helix 35	AD8	B	150	154	Right-handed 310
Helix 36	AD9	B	210	212	Right-handed 310
Helix 37	AE1	B	213	222	Right-handed alpha
Helix 38	AE2	B	236	246	Right-handed alpha
Helix 39	AE3	B	249	258	Right-handed alpha
Helix 40	AE4	B	259	262	Right-handed 310
Helix 41	AE5	B	265	269	Right-handed 310
Helix 42	AE6	B	303	314	Right-handed alpha
Helix 43	AE7	B	316	329	Right-handed alpha
Helix 44	AE8	B	344	346	Right-handed 310
Helix 45	AE9	B	381	386	Right-handed alpha
Helix 46	AF1	B	405	423	Right-handed alpha
Helix 47	AF2	B	427	435	Right-handed 310
Helix 48	AF3	B	498	502	Right-handed 310
Helix 49	AF4	B	505	515	Right-handed alpha
Helix 50	AF5	B	516	533	Right-handed alpha
Helix 51	AF6	B	536	549	Right-handed alpha
Helix 52	AF7	B	551	562	Right-handed alpha
Helix 53	AF8	B	567	572	Right-handed alpha
Helix 54	AF9	B	585	589	Right-handed 310
Helix 55	AG1	B	612	626	Right-handed alpha
Helix 56	AG2	B	658	662	Right-handed 310
Helix 57	AG3	B	672	677	Right-handed alpha
Helix 58	AG4	B	678	691	Right-handed alpha
Helix 59	AG5	B	700	707	Right-handed 310
Helix 60	AG6	B	725	738	Right-handed alpha
Helix 61	AG7	B	741	748	Right-handed 310
Helix 62	AG8	C	52	57	Right-handed alpha
Helix 63	AG9	C	62	68	Right-handed alpha
Helix 64	AH1	C	107	119	Right-handed alpha
Helix 65	AH2	C	150	154	Right-handed 310
Helix 66	AH3	C	210	212	Right-handed 310
Helix 67	AH4	C	213	222	Right-handed alpha
Helix 68	AH5	C	236	246	Right-handed alpha
Helix 69	AH6	C	249	258	Right-handed alpha
Helix 70	AH7	C	259	262	Right-handed 310
Helix 71	AH8	C	265	269	Right-handed 310
Helix 72	AH9	C	303	314	Right-handed alpha
Helix 73	AI1	C	316	329	Right-handed alpha
Helix 74	AI2	C	344	346	Right-handed 310
Helix 75	AI3	C	381	386	Right-handed alpha
Helix 76	AI4	C	405	423	Right-handed alpha
Helix 77	AI5	C	427	435	Right-handed 310
Helix 78	AI6	C	498	502	Right-handed 310
Helix 79	AI7	C	505	515	Right-handed alpha
Helix 80	AI8	C	516	533	Right-handed alpha
Helix 81	AI9	C	536	549	Right-handed alpha
Helix 82	AJ1	C	551	562	Right-handed alpha
Helix 83	AJ2	C	567	572	Right-handed alpha
Helix 84	AJ3	C	585	589	Right-handed 310
Helix 85	AJ4	C	612	626	Right-handed alpha
Helix 86	AJ5	C	658	662	Right-handed 310
Helix 87	AJ6	C	672	677	Right-handed alpha
Helix 88	AJ7	C	678	691	Right-handed alpha
Helix 89	AJ8	C	700	702	Right-handed 310
Helix 90	AJ9	C	703	708	Right-handed alpha
Helix 91	AK1	C	725	738	Right-handed alpha
Helix 92	AK2	C	741	743	Right-handed 310
Helix 93	AK3	C	744	749	Right-handed alpha
Helix 94	AK4	D	52	57	Right-handed alpha
Helix 95	AK5	D	62	68	Right-handed alpha
Helix 96	AK6	D	107	119	Right-handed alpha
Helix 97	AK7	D	150	154	Right-handed 310
Helix 98	AK8	D	210	212	Right-handed 310
Helix 99	AK9	D	213	222	Right-handed alpha
Helix 100	AL1	D	236	246	Right-handed alpha
Helix 101	AL2	D	249	258	Right-handed alpha
Helix 102	AL3	D	259	262	Right-handed 310
Helix 103	AL4	D	265	269	Right-handed 310
Helix 104	AL5	D	303	314	Right-handed alpha
Helix 105	AL6	D	316	329	Right-handed alpha
Helix 106	AL7	D	344	346	Right-handed 310
Helix 107	AL8	D	381	386	Right-handed alpha
Helix 108	AL9	D	405	423	Right-handed alpha
Helix 109	AM1	D	427	435	Right-handed 310
Helix 110	AM2	D	498	502	Right-handed 310
Helix 111	AM3	D	505	515	Right-handed alpha
Helix 112	AM4	D	516	533	Right-handed alpha
Helix 113	AM5	D	536	549	Right-handed alpha
Helix 114	AM6	D	551	562	Right-handed alpha
Helix 115	AM7	D	567	572	Right-handed alpha
Helix 116	AM8	D	585	589	Right-handed 310
Helix 117	AM9	D	612	626	Right-handed alpha
Helix 118	AN1	D	658	662	Right-handed 310
Helix 119	AN2	D	672	677	Right-handed alpha
Helix 120	AN3	D	678	691	Right-handed alpha
Helix 121	AN4	D	700	707	Right-handed 310
Helix 122	AN5	D	725	738	Right-handed alpha
Helix 123	AN6	D	741	743	Right-handed 310
Helix 124	AN7	D	744	749	Right-handed alpha

There are 18 sheets in PDB entry 6BY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	C	453	454	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	B	488	495	anti-parallel
Strand 3	C	488	494	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	333	342	anti-parallel
Strand 5	A	368	377	anti-parallel
Strand 6	A	131	140	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	184	191	anti-parallel
Strand 9	A	194	201	anti-parallel
Strand 10	A	271	272	anti-parallel
Strand 11	A	286	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	C	72	73	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	D	488	494	anti-parallel
Strand 4	C	96	97	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	629	634	parallel
Strand 3	A	602	606	parallel
Strand 4	A	664	667	parallel
Strand 5	A	695	698	parallel
Strand 6	A	718	721	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	647	649	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	D	453	454	parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	333	342	anti-parallel
Strand 5	B	368	377	anti-parallel
Strand 6	B	131	140	anti-parallel
Strand 7	B	160	167	anti-parallel
Strand 8	B	184	191	anti-parallel
Strand 9	B	194	201	anti-parallel
Strand 10	B	271	272	anti-parallel
Strand 11	B	286	295	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	D	72	73	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	629	634	parallel
Strand 3	B	602	606	parallel
Strand 4	B	664	667	parallel
Strand 5	B	695	698	parallel
Strand 6	B	718	721	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	641	first strand
Strand 2	B	647	649	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	C	333	342	anti-parallel
Strand 5	C	368	377	anti-parallel
Strand 6	C	131	140	anti-parallel
Strand 7	C	160	167	anti-parallel
Strand 8	C	184	191	anti-parallel
Strand 9	C	194	201	anti-parallel
Strand 10	C	271	272	anti-parallel
Strand 11	C	286	295	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	629	634	parallel
Strand 3	C	602	606	parallel
Strand 4	C	664	667	parallel
Strand 5	C	695	698	parallel
Strand 6	C	718	721	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	647	649	anti-parallel

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There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	286	295	anti-parallel
Strand 4	D	333	342	anti-parallel
Strand 5	D	368	377	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	184	191	anti-parallel
Strand 9	D	194	201	anti-parallel
Strand 10	D	271	272	anti-parallel
Strand 11	D	286	295	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	653	first strand
Strand 2	D	629	634	parallel
Strand 3	D	602	606	parallel
Strand 4	D	664	667	parallel
Strand 5	D	695	698	parallel
Strand 6	D	718	721	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	641	first strand
Strand 2	D	647	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BY0