Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BYC entry

There is 1 chain in PDB entry 6BYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29GLN 890
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6BYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 54Right-handed alpha
Helix 2
AA2
A
54 59Right-handed alpha
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
86 97Right-handed 310
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
152 155Right-handed 310
Helix 7
AA7
A
168 179Right-handed alpha
Helix 8
AA8
A
200 205Right-handed 310
Helix 9
AA9
A
208 213Right-handed 310
Helix 10
AB1
A
383 387Right-handed 310
Helix 11
AB2
A
388 402Right-handed alpha
Helix 12
AB3
A
417 428Right-handed alpha
Helix 13
AB4
A
445 464Right-handed alpha
Helix 14
AB5
A
477 485Right-handed alpha
Helix 15
AB6
A
485 495Right-handed alpha
Helix 16
AB7
A
496 513Right-handed alpha
Helix 17
AB8
A
513 523Right-handed alpha
Helix 18
AB9
A
561 568Right-handed 310
Helix 19
AC1
A
583 591Right-handed alpha
Helix 20
AC2
A
592 596Right-handed 310
Helix 21
AC3
A
600 606Right-handed alpha
Helix 22
AC4
A
613 627Right-handed alpha
Helix 23
AC5
A
631 657Right-handed alpha
Helix 24
AC6
A
688 698Right-handed alpha
Helix 25
AC7
A
763 767Right-handed alpha
Helix 26
AC8
A
771 773Right-handed 310
Helix 27
AC9
A
797 801Right-handed 310
Helix 28
AD1
A
865 873Right-handed alpha
Helix 29
AD2
A
877 883Right-handed alpha
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There are 13 sheets in PDB entry 6BYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
229 234anti-parallel
Strand 3
A
116 121anti-parallel
Strand 4
A
147 150anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
41 44anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
158 167anti-parallel
Strand 5
A
127 132anti-parallel
Strand 6
A
135 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
224 225anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 249first strand
Strand 2
A
253 264anti-parallel
Strand 3
A
296 307anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 293first strand
Strand 2
A
268 277anti-parallel
Strand 3
A
323 330anti-parallel
Strand 4
A
336 343anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
368 370anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
358 359anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
469 473parallel
Strand 3
A
430 434parallel
Strand 4
A
406 409parallel
Strand 5
A
372 377parallel
Strand 6
A
663 666parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 550first strand
Strand 2
A
573 575parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 707first strand
Strand 2
A
712 719anti-parallel
Strand 3
A
754 762anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 750first strand
Strand 2
A
725 735anti-parallel
Strand 3
A
775 783anti-parallel
Strand 4
A
786 794anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
808 814first strand
Strand 2
A
819 825anti-parallel
Strand 3
A
856 862anti-parallel
Strand 4
A
841 843anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 850first strand
Strand 2
A
829 835anti-parallel
Strand 3
A
874 876anti-parallel
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