Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BYH entry

There are 9 chains in PDB entry 6BYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	LYS 155
B	ALA 0	GLU 162
E	ALA 0	THR 931
F	ALA 0	THR 931
G	ALA 0	ASP 144
I	ASP 889	LYS 927
C	GLY -2	PHE 73
D	SER -1	ARG 75
H	SER -1	GLY 74

There are 42 helices in PDB entry 6BYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed alpha
Helix 2	AA2	A	24	33	Right-handed alpha
Helix 3	AA3	A	51	65	Right-handed alpha
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	86	93	Right-handed alpha
Helix 6	AA6	A	96	111	Right-handed alpha
Helix 7	AA7	A	112	125	Right-handed alpha
Helix 8	AA8	A	131	140	Right-handed alpha
Helix 9	AA9	A	146	153	Right-handed alpha
Helix 10	AB1	B	18	22	Right-handed alpha
Helix 11	AB2	B	24	33	Right-handed alpha
Helix 12	AB3	B	51	65	Right-handed alpha
Helix 13	AB4	B	66	68	Right-handed 310
Helix 14	AB5	B	86	93	Right-handed alpha
Helix 15	AB6	B	96	111	Right-handed alpha
Helix 16	AB7	B	112	126	Right-handed alpha
Helix 17	AB8	B	131	140	Right-handed alpha
Helix 18	AB9	B	146	160	Right-handed alpha
Helix 19	AC1	E	891	903	Right-handed alpha
Helix 20	AC2	E	906	914	Right-handed alpha
Helix 21	AC3	E	917	924	Right-handed alpha
Helix 22	AC4	F	891	903	Right-handed alpha
Helix 23	AC5	F	906	914	Right-handed alpha
Helix 24	AC6	F	917	924	Right-handed alpha
Helix 25	AC7	G	18	22	Right-handed alpha
Helix 26	AC8	G	24	33	Right-handed alpha
Helix 27	AC9	G	51	65	Right-handed alpha
Helix 28	AD1	G	86	93	Right-handed alpha
Helix 29	AD2	G	96	111	Right-handed alpha
Helix 30	AD3	G	112	125	Right-handed alpha
Helix 31	AD4	G	131	140	Right-handed alpha
Helix 32	AD5	I	891	903	Right-handed alpha
Helix 33	AD6	I	906	914	Right-handed alpha
Helix 34	AD7	I	917	924	Right-handed alpha
Helix 35	AD8	C	22	35	Right-handed alpha
Helix 36	AD9	C	37	39	Right-handed 310
Helix 37	AE1	C	56	60	Right-handed 310
Helix 38	AE2	D	22	35	Right-handed alpha
Helix 39	AE3	D	37	39	Right-handed 310
Helix 40	AE4	D	56	60	Right-handed 310
Helix 41	AE5	H	22	35	Right-handed alpha
Helix 42	AE6	H	37	39	Right-handed 310

There are 6 sheets in PDB entry 6BYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	3	7	anti-parallel
Strand 3	A	45	46	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	45	47	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	17	first strand
Strand 2	G	3	7	anti-parallel
Strand 3	G	45	46	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	1	9	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	17	first strand
Strand 2	D	1	9	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	17	first strand
Strand 2	H	1	9	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYH