Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BYR entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 6BYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 193
A	GLU 195	TRP 251
A	LEU 253	VAL 392
A	ILE 394	PHE 405
B	ARG 92	VAL 379
C	GLY 1	PHE 193
C	GLU 195	TRP 251
C	LEU 253	VAL 392
C	ILE 394	PHE 405
D	ARG 92	VAL 379

There are 58 helices in PDB entry 6BYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	46	51	Right-handed 310
Helix 4	AA4	A	60	87	Right-handed alpha
Helix 5	AA5	A	94	96	Right-handed 310
Helix 6	AA6	A	131	137	Right-handed alpha
Helix 7	AA7	A	139	151	Right-handed alpha
Helix 8	AA8	A	182	191	Right-handed alpha
Helix 9	AA9	A	194	214	Right-handed alpha
Helix 10	AB1	A	223	225	Right-handed 310
Helix 11	AB2	A	256	260	Right-handed 310
Helix 12	AB3	A	261	266	Right-handed alpha
Helix 13	AB4	A	272	289	Right-handed alpha
Helix 14	AB5	A	297	308	Right-handed alpha
Helix 15	AB6	A	317	328	Right-handed alpha
Helix 16	AB7	A	343	348	Right-handed alpha
Helix 17	AB8	A	349	353	Right-handed 310
Helix 18	AB9	A	356	363	Right-handed alpha
Helix 19	AC1	B	104	110	Right-handed alpha
Helix 20	AC2	B	119	130	Right-handed alpha
Helix 21	AC3	B	140	149	Right-handed alpha
Helix 22	AC4	B	199	204	Right-handed 310
Helix 23	AC5	B	226	251	Right-handed alpha
Helix 24	AC6	B	252	257	Right-handed 310
Helix 25	AC7	B	258	267	Right-handed alpha
Helix 26	AC8	B	323	328	Right-handed 310
Helix 27	AC9	B	349	357	Right-handed alpha
Helix 28	AD1	B	359	365	Right-handed alpha
Helix 29	AD2	B	367	379	Right-handed alpha
Helix 30	AD3	C	23	31	Right-handed alpha
Helix 31	AD4	C	42	47	Right-handed alpha
Helix 32	AD5	C	48	51	Right-handed 310
Helix 33	AD6	C	56	87	Right-handed alpha
Helix 34	AD7	C	94	96	Right-handed 310
Helix 35	AD8	C	131	137	Right-handed alpha
Helix 36	AD9	C	139	151	Right-handed alpha
Helix 37	AE1	C	183	191	Right-handed alpha
Helix 38	AE2	C	194	215	Right-handed alpha
Helix 39	AE3	C	223	225	Right-handed 310
Helix 40	AE4	C	256	260	Right-handed 310
Helix 41	AE5	C	261	266	Right-handed alpha
Helix 42	AE6	C	272	289	Right-handed alpha
Helix 43	AE7	C	297	308	Right-handed alpha
Helix 44	AE8	C	319	328	Right-handed alpha
Helix 45	AE9	C	343	348	Right-handed alpha
Helix 46	AF1	C	349	353	Right-handed 310
Helix 47	AF2	C	356	362	Right-handed alpha
Helix 48	AF3	D	104	110	Right-handed alpha
Helix 49	AF4	D	119	130	Right-handed alpha
Helix 50	AF5	D	140	151	Right-handed alpha
Helix 51	AF6	D	199	204	Right-handed 310
Helix 52	AF7	D	226	250	Right-handed alpha
Helix 53	AF8	D	252	257	Right-handed 310
Helix 54	AF9	D	258	269	Right-handed alpha
Helix 55	AG1	D	323	328	Right-handed 310
Helix 56	AG2	D	350	358	Right-handed alpha
Helix 57	AG3	D	359	365	Right-handed alpha
Helix 58	AG4	D	367	379	Right-handed alpha

There are 19 sheets in PDB entry 6BYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	106	first strand
Strand 2	A	110	117	anti-parallel
Strand 3	A	123	130	anti-parallel
Strand 4	A	170	176	anti-parallel
Strand 5	A	161	166	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	B	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	219	225	anti-parallel
Strand 3	B	171	177	anti-parallel
Strand 4	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	212	214	anti-parallel
Strand 3	B	180	183	anti-parallel
Strand 4	B	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	336	347	anti-parallel
Strand 3	B	291	302	anti-parallel
Strand 4	B	311	314	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	336	347	anti-parallel
Strand 3	B	291	302	anti-parallel
Strand 4	B	321	322	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	331	332	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	105	first strand
Strand 2	C	111	117	anti-parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	170	176	anti-parallel
Strand 5	C	161	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	227	229	anti-parallel
Strand 3	C	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	D	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	219	225	anti-parallel
Strand 3	D	171	177	anti-parallel
Strand 4	D	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	212	214	anti-parallel
Strand 3	D	180	184	anti-parallel
Strand 4	D	187	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	349	anti-parallel
Strand 3	D	289	302	anti-parallel
Strand 4	D	311	316	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	349	anti-parallel
Strand 3	D	289	302	anti-parallel
Strand 4	D	321	322	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	287	first strand
Strand 2	D	331	332	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYR