Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BYS entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 20 chains in PDB entry 6BYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 13	PHE 138
A	GLU 140	TRP 196
A	LEU 198	VAL 337
A	ILE 339	PHE 350
B	ARG 92	VAL 379
C	GLU 13	PHE 138
C	GLU 140	TRP 196
C	LEU 198	VAL 337
C	ILE 339	PHE 350
D	ARG 92	VAL 379
E	GLU 13	PHE 138
E	GLU 140	TRP 196
E	LEU 198	VAL 337
E	ILE 339	PHE 350
F	ARG 92	VAL 379
G	GLU 13	PHE 138
G	GLU 140	TRP 196
G	LEU 198	VAL 337
G	ILE 339	PHE 350
H	ARG 92	VAL 379

There are100 helices in PDB entry 6BYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	31	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	76	83	Right-handed alpha
Helix 4	AA4	A	84	94	Right-handed alpha
Helix 5	AA5	A	127	136	Right-handed alpha
Helix 6	AA6	A	139	160	Right-handed alpha
Helix 7	AA7	A	168	172	Right-handed 310
Helix 8	AA8	A	201	205	Right-handed 310
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	217	233	Right-handed alpha
Helix 11	AB2	A	242	253	Right-handed alpha
Helix 12	AB3	A	262	273	Right-handed alpha
Helix 13	AB4	A	288	293	Right-handed alpha
Helix 14	AB5	A	301	307	Right-handed alpha
Helix 15	AB6	B	105	110	Right-handed alpha
Helix 16	AB7	B	119	131	Right-handed alpha
Helix 17	AB8	B	140	151	Right-handed alpha
Helix 18	AB9	B	199	204	Right-handed 310
Helix 19	AC1	B	226	250	Right-handed alpha
Helix 20	AC2	B	252	257	Right-handed 310
Helix 21	AC3	B	258	269	Right-handed alpha
Helix 22	AC4	B	323	329	Right-handed alpha
Helix 23	AC5	B	350	357	Right-handed alpha
Helix 24	AC6	B	359	365	Right-handed alpha
Helix 25	AC7	B	367	379	Right-handed alpha
Helix 26	AC8	C	15	31	Right-handed alpha
Helix 27	AC9	C	39	43	Right-handed 310
Helix 28	AD1	C	76	83	Right-handed alpha
Helix 29	AD2	C	84	94	Right-handed alpha
Helix 30	AD3	C	127	136	Right-handed alpha
Helix 31	AD4	C	139	160	Right-handed alpha
Helix 32	AD5	C	168	172	Right-handed 310
Helix 33	AD6	C	201	205	Right-handed 310
Helix 34	AD7	C	206	211	Right-handed alpha
Helix 35	AD8	C	217	233	Right-handed alpha
Helix 36	AD9	C	242	252	Right-handed alpha
Helix 37	AE1	C	262	273	Right-handed alpha
Helix 38	AE2	C	288	293	Right-handed alpha
Helix 39	AE3	C	301	307	Right-handed alpha
Helix 40	AE4	D	105	110	Right-handed alpha
Helix 41	AE5	D	119	131	Right-handed alpha
Helix 42	AE6	D	140	151	Right-handed alpha
Helix 43	AE7	D	199	204	Right-handed 310
Helix 44	AE8	D	226	250	Right-handed alpha
Helix 45	AE9	D	252	257	Right-handed 310
Helix 46	AF1	D	258	269	Right-handed alpha
Helix 47	AF2	D	323	329	Right-handed alpha
Helix 48	AF3	D	350	355	Right-handed alpha
Helix 49	AF4	D	359	365	Right-handed alpha
Helix 50	AF5	D	367	377	Right-handed alpha
Helix 51	AF6	E	15	31	Right-handed alpha
Helix 52	AF7	E	39	43	Right-handed 310
Helix 53	AF8	E	76	83	Right-handed alpha
Helix 54	AF9	E	84	94	Right-handed alpha
Helix 55	AG1	E	127	136	Right-handed alpha
Helix 56	AG2	E	139	160	Right-handed alpha
Helix 57	AG3	E	168	172	Right-handed 310
Helix 58	AG4	E	201	205	Right-handed 310
Helix 59	AG5	E	206	211	Right-handed alpha
Helix 60	AG6	E	217	233	Right-handed alpha
Helix 61	AG7	E	242	252	Right-handed alpha
Helix 62	AG8	E	262	273	Right-handed alpha
Helix 63	AG9	E	288	293	Right-handed alpha
Helix 64	AH1	E	301	307	Right-handed alpha
Helix 65	AH2	F	105	110	Right-handed alpha
Helix 66	AH3	F	119	131	Right-handed alpha
Helix 67	AH4	F	140	151	Right-handed alpha
Helix 68	AH5	F	199	204	Right-handed 310
Helix 69	AH6	F	226	250	Right-handed alpha
Helix 70	AH7	F	252	257	Right-handed 310
Helix 71	AH8	F	258	269	Right-handed alpha
Helix 72	AH9	F	323	329	Right-handed alpha
Helix 73	AI1	F	350	357	Right-handed alpha
Helix 74	AI2	F	359	365	Right-handed alpha
Helix 75	AI3	F	367	377	Right-handed alpha
Helix 76	AI4	G	15	31	Right-handed alpha
Helix 77	AI5	G	39	43	Right-handed 310
Helix 78	AI6	G	76	83	Right-handed alpha
Helix 79	AI7	G	84	94	Right-handed alpha
Helix 80	AI8	G	127	136	Right-handed alpha
Helix 81	AI9	G	139	160	Right-handed alpha
Helix 82	AJ1	G	168	172	Right-handed 310
Helix 83	AJ2	G	201	205	Right-handed 310
Helix 84	AJ3	G	206	211	Right-handed alpha
Helix 85	AJ4	G	217	233	Right-handed alpha
Helix 86	AJ5	G	242	253	Right-handed alpha
Helix 87	AJ6	G	262	273	Right-handed alpha
Helix 88	AJ7	G	288	293	Right-handed alpha
Helix 89	AJ8	G	301	307	Right-handed alpha
Helix 90	AJ9	H	105	110	Right-handed alpha
Helix 91	AK1	H	119	131	Right-handed alpha
Helix 92	AK2	H	140	151	Right-handed alpha
Helix 93	AK3	H	199	204	Right-handed 310
Helix 94	AK4	H	226	250	Right-handed alpha
Helix 95	AK5	H	252	257	Right-handed 310
Helix 96	AK6	H	258	269	Right-handed alpha
Helix 97	AK7	H	323	329	Right-handed alpha
Helix 98	AK8	H	350	357	Right-handed alpha
Helix 99	AK9	H	359	365	Right-handed alpha
Helix 100	AL1	H	367	377	Right-handed alpha

There are 36 sheets in PDB entry 6BYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	68	75	anti-parallel
Strand 4	A	115	121	anti-parallel
Strand 5	A	106	111	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	B	98	99	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	219	225	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	197	198	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	B	181	183	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	336	349	anti-parallel
Strand 3	B	289	303	anti-parallel
Strand 4	B	310	316	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	336	349	anti-parallel
Strand 3	B	289	303	anti-parallel
Strand 4	B	321	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	331	332	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	56	61	anti-parallel
Strand 3	C	68	75	anti-parallel
Strand 4	C	115	121	anti-parallel
Strand 5	C	106	111	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	188	190	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	215	216	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	D	98	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	219	225	anti-parallel
Strand 3	D	171	178	anti-parallel
Strand 4	D	196	198	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	190	first strand
Strand 2	D	181	183	anti-parallel
Strand 3	D	212	214	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	349	anti-parallel
Strand 3	D	289	303	anti-parallel
Strand 4	D	310	314	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	336	349	anti-parallel
Strand 3	D	289	303	anti-parallel
Strand 4	D	321	322	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	287	first strand
Strand 2	D	331	332	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	51	first strand
Strand 2	E	56	61	anti-parallel
Strand 3	E	68	75	anti-parallel
Strand 4	E	115	121	anti-parallel
Strand 5	E	106	111	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	164	first strand
Strand 2	E	188	189	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	215	216	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	F	98	99	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	156	first strand
Strand 2	F	219	225	anti-parallel
Strand 3	F	171	178	anti-parallel
Strand 4	F	196	198	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	190	first strand
Strand 2	F	181	183	anti-parallel
Strand 3	F	212	214	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	274	first strand
Strand 2	F	336	349	anti-parallel
Strand 3	F	289	303	anti-parallel
Strand 4	F	310	316	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	274	first strand
Strand 2	F	336	349	anti-parallel
Strand 3	F	289	303	anti-parallel
Strand 4	F	321	322	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	287	first strand
Strand 2	F	331	332	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	51	first strand
Strand 2	G	56	61	anti-parallel
Strand 3	G	68	75	anti-parallel
Strand 4	G	115	121	anti-parallel
Strand 5	G	106	111	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	188	189	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	215	216	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	H	98	99	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	156	first strand
Strand 2	H	219	225	anti-parallel
Strand 3	H	171	178	anti-parallel
Strand 4	H	197	198	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	188	190	first strand
Strand 2	H	181	183	anti-parallel
Strand 3	H	212	214	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	270	274	first strand
Strand 2	H	336	349	anti-parallel
Strand 3	H	289	303	anti-parallel
Strand 4	H	310	314	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	270	274	first strand
Strand 2	H	336	349	anti-parallel
Strand 3	H	289	303	anti-parallel
Strand 4	H	321	322	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	286	287	first strand
Strand 2	H	331	332	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYS