Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6BYX entry

There are 2 chains in PDB entry 6BYX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 40	VAL 520
B	THR 39	VAL 520

There are 16 helices in PDB entry 6BYX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	139	Right-handed 310
Helix 2	AA2	A	195	199	Right-handed 310
Helix 3	AA3	A	200	204	Right-handed 310
Helix 4	AA4	A	205	209	Right-handed 310
Helix 5	AA5	A	231	239	Right-handed 310
Helix 6	AA6	A	290	294	Right-handed 310
Helix 7	AA7	A	362	365	Right-handed 310
Helix 8	AA8	A	370	375	Right-handed 310
Helix 9	AA9	B	135	139	Right-handed 310
Helix 10	AB1	B	195	199	Right-handed 310
Helix 11	AB2	B	200	204	Right-handed 310
Helix 12	AB3	B	205	209	Right-handed 310
Helix 13	AB4	B	231	239	Right-handed 310
Helix 14	AB5	B	290	294	Right-handed 310
Helix 15	AB6	B	362	365	Right-handed 310
Helix 16	AB7	B	370	375	Right-handed 310

There are 20 sheets in PDB entry 6BYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	55	first strand
Strand 2	A	508	517	anti-parallel
Strand 3	A	495	502	anti-parallel
Strand 4	A	484	492	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	97	103	anti-parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	124	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	160	164	anti-parallel
Strand 3	A	189	191	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	279	280	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	284	285	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	309	first strand
Strand 2	A	312	321	anti-parallel
Strand 3	A	332	339	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	309	first strand
Strand 2	A	312	321	anti-parallel
Strand 3	A	332	339	anti-parallel
Strand 4	A	367	369	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	399	407	anti-parallel
Strand 3	A	390	393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	399	407	anti-parallel
Strand 3	A	417	424	anti-parallel
Strand 4	A	432	434	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	449	456	anti-parallel
Strand 3	A	459	466	anti-parallel
Strand 4	A	473	477	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	55	first strand
Strand 2	B	508	517	anti-parallel
Strand 3	B	495	502	anti-parallel
Strand 4	B	484	492	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	124	127	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	160	164	anti-parallel
Strand 3	B	189	191	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	265	274	anti-parallel
Strand 4	B	279	280	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	248	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	265	274	anti-parallel
Strand 4	B	284	285	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	309	first strand
Strand 2	B	312	321	anti-parallel
Strand 3	B	332	339	anti-parallel
Strand 4	B	348	350	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	309	first strand
Strand 2	B	312	321	anti-parallel
Strand 3	B	332	339	anti-parallel
Strand 4	B	367	369	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	399	407	anti-parallel
Strand 3	B	390	393	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	399	407	anti-parallel
Strand 3	B	417	424	anti-parallel
Strand 4	B	432	434	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	446	first strand
Strand 2	B	449	456	anti-parallel
Strand 3	B	459	466	anti-parallel
Strand 4	B	473	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6BYX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6BYX