Analysis of interatomic Contacts of Structural Units in PDB entry:
6C01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C01 entry

There is 1 chain in PDB entry 6C01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 53	HIS 690

There are 78 helices in PDB entry 6C01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	69	Right-handed 310
Helix 2	AA2	A	74	79	Right-handed alpha
Helix 3	AA3	A	84	90	Right-handed alpha
Helix 4	AA4	A	91	94	Right-handed 310
Helix 5	AA5	A	128	133	Right-handed alpha
Helix 6	AA6	A	148	152	Right-handed 310
Helix 7	AA7	A	170	177	Right-handed alpha
Helix 8	AA8	A	178	180	Right-handed 310
Helix 9	AA9	A	181	191	Right-handed alpha
Helix 10	AB1	A	204	215	Right-handed alpha
Helix 11	AB2	A	217	222	Right-handed alpha
Helix 12	AB3	A	241	250	Right-handed 310
Helix 13	AB4	A	254	261	Right-handed alpha
Helix 14	AB5	A	277	281	Right-handed 310
Helix 15	AB6	A	294	308	Right-handed alpha
Helix 16	AB7	A	324	332	Right-handed alpha
Helix 17	AB8	A	335	359	Right-handed alpha
Helix 18	AB9	A	387	389	Right-handed 310
Helix 19	AC1	A	419	427	Right-handed alpha
Helix 20	AC2	A	442	444	Right-handed 310
Helix 21	AC3	A	445	449	Right-handed 310
Helix 22	AC4	A	489	493	Right-handed 310
Helix 23	AC5	A	516	526	Right-handed alpha
Helix 24	AC6	A	539	543	Right-handed 310
Helix 25	AC7	A	582	592	Right-handed alpha
Helix 26	AC8	A	596	608	Right-handed alpha
Helix 27	AC9	A	672	676	Right-handed 310
Helix 28	AD1	A	678	685	Right-handed alpha
Helix 29	AD2	A	695	699	Right-handed 310
Helix 30	AD3	A	703	709	Right-handed 310
Helix 31	AD4	A	710	712	Right-handed 310
Helix 32	AD5	A	718	731	Right-handed alpha
Helix 33	AD6	A	731	741	Right-handed alpha
Helix 34	AD7	A	761	765	Right-handed 310
Helix 35	AD8	A	814	818	Right-handed 310
Helix 36	AD9	A	823	826	Right-handed 310
Helix 37	AE1	A	827	834	Right-handed alpha
Helix 38	AE2	A	838	847	Right-handed alpha
Helix 39	AE3	A	857	867	Right-handed alpha
Helix 40	AE4	B	74	79	Right-handed alpha
Helix 41	AE5	B	84	89	Right-handed alpha
Helix 42	AE6	B	90	94	Right-handed 310
Helix 43	AE7	B	118	123	Right-handed alpha
Helix 44	AE8	B	128	133	Right-handed alpha
Helix 45	AE9	B	170	177	Right-handed alpha
Helix 46	AF1	B	178	180	Right-handed 310
Helix 47	AF2	B	181	191	Right-handed alpha
Helix 48	AF3	B	204	215	Right-handed alpha
Helix 49	AF4	B	217	222	Right-handed alpha
Helix 50	AF5	B	241	250	Right-handed 310
Helix 51	AF6	B	254	262	Right-handed alpha
Helix 52	AF7	B	277	281	Right-handed 310
Helix 53	AF8	B	294	308	Right-handed alpha
Helix 54	AF9	B	324	332	Right-handed alpha
Helix 55	AG1	B	335	359	Right-handed alpha
Helix 56	AG2	B	387	389	Right-handed 310
Helix 57	AG3	B	419	428	Right-handed alpha
Helix 58	AG4	B	442	444	Right-handed 310
Helix 59	AG5	B	445	449	Right-handed 310
Helix 60	AG6	B	489	493	Right-handed 310
Helix 61	AG7	B	516	526	Right-handed alpha
Helix 62	AG8	B	539	543	Right-handed 310
Helix 63	AG9	B	582	592	Right-handed alpha
Helix 64	AH1	B	596	608	Right-handed alpha
Helix 65	AH2	B	672	676	Right-handed 310
Helix 66	AH3	B	678	685	Right-handed alpha
Helix 67	AH4	B	695	699	Right-handed 310
Helix 68	AH5	B	703	709	Right-handed 310
Helix 69	AH6	B	710	712	Right-handed 310
Helix 70	AH7	B	718	731	Right-handed alpha
Helix 71	AH8	B	731	741	Right-handed alpha
Helix 72	AH9	B	761	765	Right-handed 310
Helix 73	AI1	B	793	797	Right-handed 310
Helix 74	AI2	B	814	818	Right-handed 310
Helix 75	AI3	B	823	826	Right-handed 310
Helix 76	AI4	B	827	834	Right-handed alpha
Helix 77	AI5	B	838	847	Right-handed alpha
Helix 78	AI6	B	857	867	Right-handed alpha

There are 18 sheets in PDB entry 6C01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	266	269	parallel
Strand 3	A	316	321	parallel
Strand 4	A	161	166	parallel
Strand 5	A	366	370	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	192	194	anti-parallel
Strand 8	A	507	509	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	512	513	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	235	237	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	481	482	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	468	470	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	405	408	anti-parallel
Strand 3	A	459	463	anti-parallel
Strand 4	A	436	440	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	848	849	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	631	635	anti-parallel
Strand 3	A	641	648	anti-parallel
Strand 4	A	743	750	anti-parallel
Strand 5	A	779	787	anti-parallel
Strand 6	A	801	809	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	692	first strand
Strand 2	A	714	717	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	266	269	parallel
Strand 3	B	316	321	parallel
Strand 4	B	161	166	parallel
Strand 5	B	366	370	parallel
Strand 6	B	496	499	anti-parallel
Strand 7	B	192	194	anti-parallel
Strand 8	B	507	509	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	512	513	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	235	237	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	481	482	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	468	470	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	399	first strand
Strand 2	B	405	408	anti-parallel
Strand 3	B	459	463	anti-parallel
Strand 4	B	436	440	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	622	626	parallel
Strand 3	B	631	635	anti-parallel
Strand 4	B	641	648	anti-parallel
Strand 5	B	743	750	anti-parallel
Strand 6	B	779	787	anti-parallel
Strand 7	B	801	809	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	615	first strand
Strand 2	B	848	849	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	692	first strand
Strand 2	B	714	717	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C01

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C01