Analysis of interatomic Contacts of Structural Units in PDB entry:
6C06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C06 entry

There are 7 chains in PDB entry 6C06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	VAL 4	ALA 1282
E	GLY 27	GLY 109
F	PHE 202	LEU 527
J	ALA 2	ARG 108

There are118 helices in PDB entry 6C06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	39	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	203	220	Right-handed alpha
Helix 4	AA4	B	34	45	Right-handed alpha
Helix 5	AA5	B	72	82	Right-handed alpha
Helix 6	AA6	B	204	224	Right-handed alpha
Helix 7	AA7	C	52	54	Right-handed 310
Helix 8	AA8	C	55	66	Right-handed alpha
Helix 9	AA9	C	67	76	Right-handed alpha
Helix 10	AB1	C	88	94	Right-handed alpha
Helix 11	AB2	C	119	126	Right-handed alpha
Helix 12	AB3	C	167	171	Right-handed 310
Helix 13	AB4	C	233	236	Right-handed 310
Helix 14	AB5	C	237	242	Right-handed alpha
Helix 15	AB6	C	244	253	Right-handed alpha
Helix 16	AB7	C	256	265	Right-handed alpha
Helix 17	AB8	C	269	282	Right-handed alpha
Helix 18	AB9	C	293	301	Right-handed alpha
Helix 19	AC1	C	309	321	Right-handed alpha
Helix 20	AC2	C	334	349	Right-handed alpha
Helix 21	AC3	C	383	398	Right-handed alpha
Helix 22	AC4	C	399	407	Right-handed alpha
Helix 23	AC5	C	421	426	Right-handed alpha
Helix 24	AC6	C	427	432	Right-handed alpha
Helix 25	AC7	C	444	452	Right-handed alpha
Helix 26	AC8	C	469	473	Right-handed 310
Helix 27	AC9	C	534	539	Right-handed 310
Helix 28	AD1	C	596	600	Right-handed 310
Helix 29	AD2	C	601	614	Right-handed alpha
Helix 30	AD3	C	629	636	Right-handed alpha
Helix 31	AD4	C	637	639	Right-handed 310
Helix 32	AD5	C	708	712	Right-handed 310
Helix 33	AD6	C	740	745	Right-handed alpha
Helix 34	AD7	C	816	826	Right-handed alpha
Helix 35	AD8	C	927	930	Right-handed 310
Helix 36	AD9	C	931	943	Right-handed alpha
Helix 37	AE1	C	960	963	Right-handed 310
Helix 38	AE2	C	982	991	Right-handed alpha
Helix 39	AE3	C	1036	1041	Right-handed alpha
Helix 40	AE4	C	1069	1080	Right-handed alpha
Helix 41	AE5	C	1084	1095	Right-handed alpha
Helix 42	AE6	C	1095	1109	Right-handed alpha
Helix 43	AE7	C	1118	1123	Right-handed 310
Helix 44	AE8	C	1124	1130	Right-handed alpha
Helix 45	AE9	D	16	24	Right-handed alpha
Helix 46	AF1	D	48	53	Right-handed alpha
Helix 47	AF2	D	86	91	Right-handed alpha
Helix 48	AF3	D	104	109	Right-handed alpha
Helix 49	AF4	D	114	119	Right-handed alpha
Helix 50	AF5	D	122	130	Right-handed alpha
Helix 51	AF6	D	147	185	Right-handed alpha
Helix 52	AF7	D	190	226	Right-handed alpha
Helix 53	AF8	D	238	245	Right-handed alpha
Helix 54	AF9	D	259	267	Right-handed alpha
Helix 55	AG1	D	269	284	Right-handed alpha
Helix 56	AG2	D	287	305	Right-handed alpha
Helix 57	AG3	D	308	313	Right-handed 310
Helix 58	AG4	D	340	358	Right-handed alpha
Helix 59	AG5	D	359	361	Right-handed 310
Helix 60	AG6	D	364	383	Right-handed alpha
Helix 61	AG7	D	411	417	Right-handed alpha
Helix 62	AG8	D	445	453	Right-handed alpha
Helix 63	AG9	D	453	459	Right-handed alpha
Helix 64	AH1	D	460	463	Right-handed 310
Helix 65	AH2	D	471	479	Right-handed alpha
Helix 66	AH3	D	483	491	Right-handed alpha
Helix 67	AH4	D	527	533	Right-handed alpha
Helix 68	AH5	D	548	558	Right-handed alpha
Helix 69	AH6	D	578	590	Right-handed alpha
Helix 70	AH7	D	615	624	Right-handed alpha
Helix 71	AH8	D	643	651	Right-handed alpha
Helix 72	AH9	D	669	676	Right-handed alpha
Helix 73	AI1	D	690	703	Right-handed alpha
Helix 74	AI2	D	708	726	Right-handed alpha
Helix 75	AI3	D	742	762	Right-handed alpha
Helix 76	AI4	D	767	793	Right-handed alpha
Helix 77	AI5	D	797	805	Right-handed alpha
Helix 78	AI6	D	810	818	Right-handed alpha
Helix 79	AI7	D	848	877	Right-handed alpha
Helix 80	AI8	D	878	882	Right-handed 310
Helix 81	AI9	D	913	919	Right-handed alpha
Helix 82	AJ1	D	945	952	Right-handed alpha
Helix 83	AJ2	D	953	956	Right-handed 310
Helix 84	AJ3	D	998	1005	Right-handed alpha
Helix 85	AJ4	D	1006	1009	Right-handed 310
Helix 86	AJ5	D	1029	1037	Right-handed alpha
Helix 87	AJ6	D	1117	1123	Right-handed alpha
Helix 88	AJ7	D	1127	1146	Right-handed alpha
Helix 89	AJ8	D	1183	1192	Right-handed alpha
Helix 90	AJ9	D	1209	1216	Right-handed alpha
Helix 91	AK1	D	1220	1225	Right-handed alpha
Helix 92	AK2	D	1229	1240	Right-handed alpha
Helix 93	AK3	D	1248	1255	Right-handed alpha
Helix 94	AK4	D	1264	1269	Right-handed alpha
Helix 95	AK5	D	1277	1282	Right-handed alpha
Helix 96	AK6	E	39	45	Right-handed alpha
Helix 97	AK7	E	50	72	Right-handed alpha
Helix 98	AK8	E	91	102	Right-handed alpha
Helix 99	AK9	F	207	224	Right-handed alpha
Helix 100	AL1	F	226	237	Right-handed alpha
Helix 101	AL2	F	244	270	Right-handed alpha
Helix 102	AL3	F	274	298	Right-handed alpha
Helix 103	AL4	F	299	308	Right-handed alpha
Helix 104	AL5	F	316	334	Right-handed alpha
Helix 105	AL6	F	336	340	Right-handed 310
Helix 106	AL7	F	347	363	Right-handed alpha
Helix 107	AL8	F	369	389	Right-handed alpha
Helix 108	AL9	F	395	403	Right-handed alpha
Helix 109	AM1	F	406	417	Right-handed alpha
Helix 110	AM2	F	450	464	Right-handed alpha
Helix 111	AM3	F	470	476	Right-handed alpha
Helix 112	AM4	F	477	480	Right-handed 310
Helix 113	AM5	F	488	494	Right-handed alpha
Helix 114	AM6	F	499	516	Right-handed alpha
Helix 115	AM7	F	517	522	Right-handed alpha
Helix 116	AM8	F	523	527	Right-handed 310
Helix 117	AM9	J	82	89	Right-handed alpha
Helix 118	AN1	J	90	106	Right-handed alpha

There are 40 sheets in PDB entry 6C06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	20	21	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	53	55	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	196	198	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	21	23	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	116	117	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	126	127	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	166	168	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	194	197	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	134	141	anti-parallel
Strand 3	C	148	153	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	157	158	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	377	378	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	201	202	anti-parallel
Strand 3	C	214	215	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	497	498	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	513	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	549	first strand
Strand 2	C	553	554	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	561	first strand
Strand 2	C	569	571	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	702	703	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	654	first strand
Strand 2	C	657	661	anti-parallel
Strand 3	C	670	671	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	755	760	first strand
Strand 2	C	865	871	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	806	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	886	first strand
Strand 2	C	892	896	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1024	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	316	319	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	138	first strand
Strand 2	D	253	255	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	330	first strand
Strand 2	D	334	335	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	393	first strand
Strand 2	D	397	398	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	523	524	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	662	664	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	981	982	first strand
Strand 2	D	987	988	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1053	first strand
Strand 2	D	1102	1105	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1066	first strand
Strand 2	D	1075	1077	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1088	1089	first strand
Strand 2	D	1097	1098	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1165	1166	first strand
Strand 2	D	1180	1181	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1273	1274	first strand
Strand 2	E	104	105	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	426	427	first strand
Strand 2	F	431	434	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	43	45	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	62	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C06

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C06