Analysis of interatomic Contacts of Structural Units in PDB entry:
6C07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C07 entry

There are 4 chains in PDB entry 6C07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 21	GLN 406
B	GLN 22	GLN 406
C	GLU 21	GLN 406
D	PHE 23	GLN 406

There are 56 helices in PDB entry 6C07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	54	Right-handed alpha
Helix 2	AA2	A	83	96	Right-handed alpha
Helix 3	AA3	A	100	103	Right-handed 310
Helix 4	AA4	A	156	176	Right-handed alpha
Helix 5	AA5	A	177	182	Right-handed alpha
Helix 6	AA6	A	222	234	Right-handed alpha
Helix 7	AA7	A	234	239	Right-handed alpha
Helix 8	AA8	A	240	244	Right-handed 310
Helix 9	AA9	A	261	266	Right-handed alpha
Helix 10	AB1	A	297	316	Right-handed alpha
Helix 11	AB2	A	351	363	Right-handed alpha
Helix 12	AB3	A	366	375	Right-handed alpha
Helix 13	AB4	A	381	386	Right-handed 310
Helix 14	AB5	A	397	401	Right-handed 310
Helix 15	AB6	B	34	54	Right-handed alpha
Helix 16	AB7	B	83	96	Right-handed alpha
Helix 17	AB8	B	100	103	Right-handed 310
Helix 18	AB9	B	131	135	Right-handed 310
Helix 19	AC1	B	156	175	Right-handed alpha
Helix 20	AC2	B	222	234	Right-handed alpha
Helix 21	AC3	B	234	239	Right-handed alpha
Helix 22	AC4	B	240	244	Right-handed 310
Helix 23	AC5	B	261	265	Right-handed 310
Helix 24	AC6	B	297	316	Right-handed alpha
Helix 25	AC7	B	351	363	Right-handed alpha
Helix 26	AC8	B	366	374	Right-handed alpha
Helix 27	AC9	B	381	386	Right-handed 310
Helix 28	AD1	B	397	401	Right-handed 310
Helix 29	AD2	C	34	54	Right-handed alpha
Helix 30	AD3	C	83	96	Right-handed alpha
Helix 31	AD4	C	100	103	Right-handed 310
Helix 32	AD5	C	156	176	Right-handed alpha
Helix 33	AD6	C	177	182	Right-handed alpha
Helix 34	AD7	C	222	234	Right-handed alpha
Helix 35	AD8	C	234	239	Right-handed alpha
Helix 36	AD9	C	240	244	Right-handed 310
Helix 37	AE1	C	261	265	Right-handed 310
Helix 38	AE2	C	297	316	Right-handed alpha
Helix 39	AE3	C	351	363	Right-handed alpha
Helix 40	AE4	C	366	374	Right-handed alpha
Helix 41	AE5	C	381	386	Right-handed 310
Helix 42	AE6	C	397	401	Right-handed 310
Helix 43	AE7	D	34	54	Right-handed alpha
Helix 44	AE8	D	83	96	Right-handed alpha
Helix 45	AE9	D	100	103	Right-handed 310
Helix 46	AF1	D	156	176	Right-handed alpha
Helix 47	AF2	D	177	182	Right-handed alpha
Helix 48	AF3	D	222	234	Right-handed alpha
Helix 49	AF4	D	234	239	Right-handed alpha
Helix 50	AF5	D	240	244	Right-handed 310
Helix 51	AF6	D	261	266	Right-handed alpha
Helix 52	AF7	D	297	316	Right-handed alpha
Helix 53	AF8	D	351	363	Right-handed alpha
Helix 54	AF9	D	366	375	Right-handed alpha
Helix 55	AG1	D	381	385	Right-handed 310
Helix 56	AG2	D	397	401	Right-handed 310

There are 16 sheets in PDB entry 6C07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	30	first strand
Strand 2	A	184	199	anti-parallel
Strand 3	A	202	217	anti-parallel
Strand 4	A	249	252	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	117	first strand
Strand 2	A	69	77	parallel
Strand 3	A	58	66	anti-parallel
Strand 4	A	268	269	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	104	105	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	148	first strand
Strand 2	A	321	327	anti-parallel
Strand 3	A	337	341	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	30	first strand
Strand 2	B	184	199	anti-parallel
Strand 3	B	202	217	anti-parallel
Strand 4	B	249	252	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	117	first strand
Strand 2	B	69	77	parallel
Strand 3	B	58	66	anti-parallel
Strand 4	B	268	269	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	104	105	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	148	first strand
Strand 2	B	321	328	anti-parallel
Strand 3	B	337	341	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	30	first strand
Strand 2	C	184	199	anti-parallel
Strand 3	C	202	217	anti-parallel
Strand 4	C	249	252	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	117	first strand
Strand 2	C	69	77	parallel
Strand 3	C	58	66	anti-parallel
Strand 4	C	268	269	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	104	105	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	148	first strand
Strand 2	C	321	327	anti-parallel
Strand 3	C	337	341	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	30	first strand
Strand 2	D	184	199	anti-parallel
Strand 3	D	202	217	anti-parallel
Strand 4	D	249	252	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	69	77	parallel
Strand 3	D	58	66	anti-parallel
Strand 4	D	268	269	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	104	105	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	148	first strand
Strand 2	D	321	328	anti-parallel
Strand 3	D	337	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C07

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C07