Analysis of interatomic Contacts of Structural Units in PDB entry:
6C08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C08 entry

There are 6 chains in PDB entry 6C08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 218
B	ASP 1	ASN 215
C	ILE 108	MET 549
D	GLN 1	PRO 218
E	ASP 1	ASN 215
F	ILE 108	MET 549

There are 55 helices in PDB entry 6C08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	31	Right-handed 310
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	162	164	Right-handed 310
Helix 4	AA4	A	206	209	Right-handed 310
Helix 5	AA5	B	82	86	Right-handed 310
Helix 6	AA6	B	124	130	Right-handed alpha
Helix 7	AA7	B	185	190	Right-handed alpha
Helix 8	AA8	C	109	119	Right-handed alpha
Helix 9	AA9	C	121	124	Right-handed 310
Helix 10	AB1	C	125	134	Right-handed alpha
Helix 11	AB2	C	134	155	Right-handed alpha
Helix 12	AB3	C	177	181	Right-handed 310
Helix 13	AB4	C	187	218	Right-handed alpha
Helix 14	AB5	C	267	271	Right-handed alpha
Helix 15	AB6	C	274	285	Right-handed alpha
Helix 16	AB7	C	296	302	Right-handed alpha
Helix 17	AB8	C	303	325	Right-handed alpha
Helix 18	AB9	C	346	356	Right-handed alpha
Helix 19	AC1	C	357	359	Right-handed 310
Helix 20	AC2	C	364	369	Right-handed alpha
Helix 21	AC3	C	378	403	Right-handed alpha
Helix 22	AC4	C	417	421	Right-handed 310
Helix 23	AC5	C	425	448	Right-handed alpha
Helix 24	AC6	C	450	457	Right-handed alpha
Helix 25	AC7	C	471	486	Right-handed alpha
Helix 26	AC8	C	489	493	Right-handed 310
Helix 27	AC9	C	495	505	Right-handed alpha
Helix 28	AD1	C	507	517	Right-handed alpha
Helix 29	AD2	C	527	548	Right-handed alpha
Helix 30	AD3	D	28	31	Right-handed 310
Helix 31	AD4	D	87	91	Right-handed 310
Helix 32	AD5	D	162	164	Right-handed 310
Helix 33	AD6	D	206	209	Right-handed 310
Helix 34	AD7	E	82	86	Right-handed 310
Helix 35	AD8	E	124	130	Right-handed alpha
Helix 36	AD9	E	185	190	Right-handed alpha
Helix 37	AE1	F	109	119	Right-handed alpha
Helix 38	AE2	F	122	124	Right-handed 310
Helix 39	AE3	F	125	134	Right-handed alpha
Helix 40	AE4	F	134	159	Right-handed alpha
Helix 41	AE5	F	177	181	Right-handed 310
Helix 42	AE6	F	187	218	Right-handed alpha
Helix 43	AE7	F	266	270	Right-handed 310
Helix 44	AE8	F	274	285	Right-handed alpha
Helix 45	AE9	F	297	323	Right-handed alpha
Helix 46	AF1	F	346	357	Right-handed alpha
Helix 47	AF2	F	364	369	Right-handed alpha
Helix 48	AF3	F	377	403	Right-handed alpha
Helix 49	AF4	F	410	414	Right-handed 310
Helix 50	AF5	F	417	421	Right-handed 310
Helix 51	AF6	F	425	448	Right-handed alpha
Helix 52	AF7	F	470	486	Right-handed alpha
Helix 53	AF8	F	496	505	Right-handed alpha
Helix 54	AF9	F	507	517	Right-handed alpha
Helix 55	AG1	F	526	548	Right-handed alpha

There are 20 sheets in PDB entry 6C08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	181	190	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	181	190	anti-parallel
Strand 4	A	175	176	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	210	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	73	78	anti-parallel
Strand 4	B	65	70	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	36	41	anti-parallel
Strand 5	B	48	52	anti-parallel
Strand 6	B	56	57	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	100	101	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	133	142	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	153	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	204	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	181	190	anti-parallel
Strand 4	D	169	171	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	181	190	anti-parallel
Strand 4	D	175	176	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	210	215	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	65	70	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	105	110	parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	48	52	anti-parallel
Strand 6	E	56	57	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	105	110	parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	100	101	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	133	142	anti-parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	162	166	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	153	first strand
Strand 2	E	194	201	anti-parallel
Strand 3	E	204	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C08

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C08