Analysis of interatomic Contacts of Structural Units in PDB entry:
6C09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C09 entry

There are 4 chains in PDB entry 6C09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	GLY 279
B	GLN 2	MET 99
C	GLN 2	PHE 215
D	ALA 2	ALA 257

There are 12 helices in PDB entry 6C09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	86	Right-handed alpha
Helix 2	AA2	A	139	152	Right-handed alpha
Helix 3	AA3	A	152	165	Right-handed alpha
Helix 4	AA4	A	165	178	Right-handed alpha
Helix 5	AA5	A	178	183	Right-handed alpha
Helix 6	AA6	A	268	270	Right-handed 310
Helix 7	AA7	C	90	94	Right-handed 310
Helix 8	AA8	C	200	205	Right-handed 310
Helix 9	AA9	D	94	98	Right-handed 310
Helix 10	AB1	D	130	134	Right-handed 310
Helix 11	AB2	D	145	153	Right-handed alpha
Helix 12	AB3	D	212	216	Right-handed alpha

There are 17 sheets in PDB entry 6C09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	35	41	anti-parallel
Strand 3	A	23	32	anti-parallel
Strand 4	A	8	20	anti-parallel
Strand 5	A	94	104	anti-parallel
Strand 6	A	111	118	anti-parallel
Strand 7	A	121	127	anti-parallel
Strand 8	A	130	133	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	203	212	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	232	233	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	203	212	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	237	238	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	274	277	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	79	83	anti-parallel
Strand 3	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel
Strand 5	C	62	68	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	121	126	parallel
Strand 3	C	95	108	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	51	57	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	121	126	parallel
Strand 3	C	95	108	anti-parallel
Strand 4	C	111	114	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	188	192	anti-parallel
Strand 4	C	170	171	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	D	184	186	anti-parallel
Strand 3	D	202	211	anti-parallel
Strand 4	D	154	164	anti-parallel
Strand 5	D	138	142	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	D	184	186	anti-parallel
Strand 3	D	202	211	anti-parallel
Strand 4	D	191	192	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	86	90	anti-parallel
Strand 4	D	76	79	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	123	128	parallel
Strand 3	D	99	107	anti-parallel
Strand 4	D	31	44	anti-parallel
Strand 5	D	50	57	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	123	128	parallel
Strand 3	D	99	107	anti-parallel
Strand 4	D	118	119	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	169	175	anti-parallel
Strand 3	D	221	228	anti-parallel
Strand 4	D	247	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C09

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C09