Analysis of interatomic Contacts of Structural Units in PDB entry:
6C0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C0D entry

There is 1 chain in PDB entry 6C0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ARG 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6C0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
36 53Right-handed alpha
Helix 3
AA3
A
93 110Right-handed alpha
Helix 4
AA4
A
111 114Right-handed 310
Helix 5
AA5
A
133 141Right-handed alpha
Helix 6
AA6
A
144 151Right-handed alpha
Helix 7
AA7
A
158 166Right-handed alpha
Helix 8
AA8
A
193 199Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
235 255Right-handed alpha
Helix 11
AB2
A
290 310Right-handed alpha
Helix 12
AB3
A
331 346Right-handed alpha
Helix 13
AB4
A
359 365Right-handed alpha
Helix 14
AB5
A
390 412Right-handed alpha
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There are 5 sheets in PDB entry 6C0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
75 80parallel
Strand 5
A
181 190parallel
Strand 6
A
370 376parallel
Strand 7
A
202 208anti-parallel
Strand 8
A
328 329anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
75 80parallel
Strand 5
A
181 190parallel
Strand 6
A
370 376parallel
Strand 7
A
202 208anti-parallel
Strand 8
A
350 355parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 269first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
210 219anti-parallel
Strand 4
A
315 320anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il