Analysis of interatomic Contacts of Structural Units in PDB entry:
6C0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C0E entry

There are 2 chains in PDB entry 6C0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4MET 422
B
 MET 5MET 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6C0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 64Right-handed alpha
Helix 2
AA2
A
65 67Right-handed 310
Helix 3
AA3
A
77 85Right-handed alpha
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
119 128Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
163 168Right-handed 310
Helix 8
AA8
A
175 188Right-handed alpha
Helix 9
AA9
A
209 226Right-handed alpha
Helix 10
AB1
A
243 260Right-handed alpha
Helix 11
AB2
A
288 298Right-handed alpha
Helix 12
AB3
A
299 302Right-handed 310
Helix 13
AB4
A
308 323Right-handed alpha
Helix 14
AB5
A
324 329Right-handed 310
Helix 15
AB6
A
348 352Right-handed 310
Helix 16
AB7
A
359 373Right-handed alpha
Helix 17
AB8
A
375 392Right-handed alpha
Helix 18
AB9
A
396 401Right-handed alpha
Helix 19
AC1
A
410 422Right-handed alpha
Helix 20
AC2
B
43 64Right-handed alpha
Helix 21
AC3
B
77 84Right-handed alpha
Helix 22
AC4
B
91 102Right-handed alpha
Helix 23
AC5
B
119 128Right-handed alpha
Helix 24
AC6
B
149 152Right-handed 310
Helix 25
AC7
B
164 168Right-handed 310
Helix 26
AC8
B
175 188Right-handed alpha
Helix 27
AC9
B
209 226Right-handed alpha
Helix 28
AD1
B
243 260Right-handed alpha
Helix 29
AD2
B
288 298Right-handed alpha
Helix 30
AD3
B
299 302Right-handed 310
Helix 31
AD4
B
308 323Right-handed alpha
Helix 32
AD5
B
324 329Right-handed 310
Helix 33
AD6
B
348 352Right-handed 310
Helix 34
AD7
B
359 373Right-handed alpha
Helix 35
AD8
B
375 392Right-handed alpha
Helix 36
AD9
B
396 401Right-handed alpha
Helix 37
AE1
B
410 421Right-handed alpha
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There are 6 sheets in PDB entry 6C0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
27 28anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
34 38parallel
Strand 3
A
103 106parallel
Strand 4
A
338 342parallel
Strand 5
A
332 335anti-parallel
Strand 6
A
132 137anti-parallel
Strand 7
A
155 160anti-parallel
Strand 8
A
304 307parallel
Strand 9
A
230 235parallel
Strand 10
A
280 287parallel
Strand 11
A
270 273anti-parallel
Strand 12
A
262 263anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
200 208anti-parallel
Strand 3
B
200 208anti-parallel
Strand 4
B
170 171anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
407 408parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
34 38parallel
Strand 3
B
103 106parallel
Strand 4
B
339 341parallel
Strand 5
B
332 334anti-parallel
Strand 6
B
132 138anti-parallel
Strand 7
B
154 160anti-parallel
Strand 8
B
304 307parallel
Strand 9
B
230 235parallel
Strand 10
B
280 287parallel
Strand 11
B
270 273anti-parallel
Strand 12
B
262 263anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
407 408parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il