Analysis of interatomic Contacts of Structural Units in PDB entry:
6C12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C12 entry

There are 4 chains in PDB entry 6C12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 583
D
 ASP 2ALA 87
A
 MET 1PRO 583
C
 ASP 2VAL 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6C12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 29Right-handed alpha
Helix 2
AA2
B
40 49Right-handed 310
Helix 3
AA3
B
65 76Right-handed alpha
Helix 4
AA4
B
81 101Right-handed alpha
Helix 5
AA5
B
140 156Right-handed alpha
Helix 6
AA6
B
205 209Right-handed 310
Helix 7
AA7
B
220 229Right-handed alpha
Helix 8
AA8
B
255 260Right-handed alpha
Helix 9
AA9
B
272 277Right-handed alpha
Helix 10
AB1
B
280 284Right-handed 310
Helix 11
AB2
B
285 299Right-handed alpha
Helix 12
AB3
B
315 318Right-handed 310
Helix 13
AB4
B
319 327Right-handed alpha
Helix 14
AB5
B
327 338Right-handed alpha
Helix 15
AB6
B
402 418Right-handed alpha
Helix 16
AB7
B
418 427Right-handed alpha
Helix 17
AB8
B
433 440Right-handed alpha
Helix 18
AB9
B
441 449Right-handed alpha
Helix 19
AC1
B
455 472Right-handed alpha
Helix 20
AC2
B
476 495Right-handed alpha
Helix 21
AC3
B
507 533Right-handed alpha
Helix 22
AC4
B
549 554Right-handed alpha
Helix 23
AC5
D
5 13Right-handed alpha
Helix 24
AC6
D
17 32Right-handed alpha
Helix 25
AC7
D
33 35Right-handed 310
Helix 26
AC8
D
36 47Right-handed alpha
Helix 27
AC9
D
50 59Right-handed alpha
Helix 28
AD1
D
66 84Right-handed alpha
Helix 29
AD2
A
16 29Right-handed alpha
Helix 30
AD3
A
40 49Right-handed 310
Helix 31
AD4
A
69 76Right-handed alpha
Helix 32
AD5
A
81 102Right-handed alpha
Helix 33
AD6
A
140 156Right-handed alpha
Helix 34
AD7
A
205 209Right-handed 310
Helix 35
AD8
A
220 229Right-handed alpha
Helix 36
AD9
A
255 260Right-handed alpha
Helix 37
AE1
A
272 277Right-handed alpha
Helix 38
AE2
A
280 284Right-handed 310
Helix 39
AE3
A
285 299Right-handed alpha
Helix 40
AE4
A
315 318Right-handed 310
Helix 41
AE5
A
319 327Right-handed alpha
Helix 42
AE6
A
327 339Right-handed alpha
Helix 43
AE7
A
402 418Right-handed alpha
Helix 44
AE8
A
418 427Right-handed alpha
Helix 45
AE9
A
433 440Right-handed alpha
Helix 46
AF1
A
441 450Right-handed alpha
Helix 47
AF2
A
455 471Right-handed alpha
Helix 48
AF3
A
476 495Right-handed alpha
Helix 49
AF4
A
507 533Right-handed alpha
Helix 50
AF5
A
549 554Right-handed alpha
Helix 51
AF6
C
5 13Right-handed alpha
Helix 52
AF7
C
17 30Right-handed alpha
Helix 53
AF8
C
31 35Right-handed 310
Helix 54
AF9
C
36 48Right-handed alpha
Helix 55
AG1
C
50 59Right-handed alpha
Helix 56
AG2
C
66 84Right-handed alpha
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There are 10 sheets in PDB entry 6C12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
33 37parallel
Strand 3
B
5 13parallel
Strand 4
B
190 200parallel
Strand 5
B
177 184anti-parallel
Strand 6
B
164 171anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 162first strand
Strand 2
B
33 37parallel
Strand 3
B
5 13parallel
Strand 4
B
190 200parallel
Strand 5
B
377 385parallel
Strand 6
B
367 371anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
556 560anti-parallel
Strand 3
B
565 569anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 246first strand
Strand 2
B
347 356anti-parallel
Strand 3
B
311 314anti-parallel
Strand 4
B
263 265anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
390 391parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
33 37parallel
Strand 3
A
5 13parallel
Strand 4
A
190 200parallel
Strand 5
A
177 184anti-parallel
Strand 6
A
164 171anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
33 37parallel
Strand 3
A
5 13parallel
Strand 4
A
190 200parallel
Strand 5
A
377 385parallel
Strand 6
A
367 371anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
556 560anti-parallel
Strand 3
A
565 569anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 246first strand
Strand 2
A
347 356anti-parallel
Strand 3
A
311 314anti-parallel
Strand 4
A
263 265anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
390 391parallel
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